PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P25100_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 183aa MW: 21399.3 Da PI: 9.1344 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.2e-17 | 38 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W++Ia+++ gRt+k+c++rw++ GSMUA_Achr11P25100_001 38 RGHWRPAEDAKLKELVSQHGPQHWNLIAEKIA-GRTGKSCRLRWFNQ 83 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 90 | 134 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++++eE+e+l a++++G++ W++Iar ++ gRt++ +k++w+ GSMUA_Achr11P25100_001 90 KKAFSEEEEERLFVAHRLYGNR-WALIARIFP-GRTDNAVKNHWHVT 134 679*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.819 | 33 | 84 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-14 | 37 | 86 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.99E-28 | 38 | 131 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 39 | 90 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 9.2E-16 | 41 | 101 | No hit | No description |
CDD | cd00167 | 7.05E-12 | 41 | 82 | No hit | No description |
PROSITE profile | PS51294 | 25.778 | 85 | 139 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-15 | 89 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-20 | 91 | 138 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.08E-11 | 92 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MGFFAPVAPP FVHGLTGEHE NHGKVEEDDQ RQHKLCARGH WRPAEDAKLK ELVSQHGPQH 60 WNLIAEKIAG RTGKSCRLRW FNQLDPRINK KAFSEEEEER LFVAHRLYGN RWALIARIFP 120 GRTDNAVKNH WHVTMARKQR EQCNDASSYI CTETTCRKKN HKRLHPSYDV LQPWHCSMLC 180 SDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-34 | 36 | 138 | 5 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384963.1 | 1e-104 | PREDICTED: myb-like protein Q isoform X1 | ||||
Refseq | XP_018675625.1 | 1e-104 | PREDICTED: transcriptional activator Myb-like isoform X2 | ||||
Swissprot | Q5NBM8 | 9e-65 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | M0RV90 | 1e-136 | M0RV90_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P25100_001 | 1e-137 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-63 | myb domain protein 105 |