PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P24690_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 241aa MW: 27144.7 Da PI: 6.7724 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.6e-16 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed llv+ v+++G ++W+ a+ g++Rt+k+c++rw +yl GSMUA_Achr11P24690_001 28 KGPWTEQEDSLLVRFVRLFGERRWDCLAKVSGLNRTGKSCRLRWVNYL 75 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.5 | 6.3e-18 | 82 | 126 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr+T+eE+ l +d+++++G+ W++Iar+++ gRt++++k++w++++ GSMUA_Achr11P24690_001 82 GRMTPEEEHLVLDLHAKWGNS-WSRIARYLP-GRTDNEIKNYWRTHM 126 89*****************99.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.442 | 23 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-29 | 26 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-14 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.75E-10 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 26.071 | 76 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-15 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-16 | 82 | 125 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 83 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-10 | 83 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MTSPPSIYVK AGRRARLAMA PKAEEMRKGP WTEQEDSLLV RFVRLFGERR WDCLAKVSGL 60 NRTGKSCRLR WVNYLHPDLI HGRMTPEEEH LVLDLHAKWG NSWSRIARYL PGRTDNEIKN 120 YWRTHMRRKA QERKTSASPS SSSSSSSSSS SSCSPAAAAQ GVVQSEGVKV YSMDEIWDEI 180 AAADSVSGLT AEECGLACPP PLPCPMWEDC SESLWKVDDE YKMATVLPVD DLMISDFHYS 240 D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-27 | 25 | 130 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384914.1 | 1e-132 | PREDICTED: transcription factor MYB59-like | ||||
Swissprot | Q4JL84 | 2e-75 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | M0RV49 | 1e-178 | M0RV49_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P24690_001 | 1e-178 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 4e-69 | myb domain protein 59 |
Publications ? help Back to Top | |||
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