PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P23680_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 145aa MW: 15873.3 Da PI: 4.9571

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P23680_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00046	22	43	33	54
.TTS-STCHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksL 54 ++s lsKa+i A +YI++L GSMUA_Achr11P23680_001 22 TNSSALSKASIIVDASKYIQEL 43 46777***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.8E-4	19	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00153	83	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MTSRDQKKAV LHEKLQLLRS VTNSSALSKA SIIVDASKYI QELKQKVEAC KPDLAEESSL 60 PMVTVETLEK GFWINVFSDK NCPGMLVSVL QAFQELGLDV LDATISSADS FRLEAVGGEQ 120 PQNESVDAQM VRQVVVQAIK KCMGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009384774.1	1e-102	PREDICTED: transcription factor SCREAM2-like isoform X1
TrEMBL	M0RUU8	1e-101	M0RUU8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P23680_001	1e-102	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1393	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12860.1	3e-09	bHLH family protein