PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P23500_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 235aa MW: 26054.4 Da PI: 7.5735

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P23500_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.5	3.1e-18	18	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W +eEd++lv++v+ +G ++W+t +++ g++R++k+c++rw++yl GSMUA_Achr11P23500_001 18 RGAWIAEEDQKLVEYVRIHGDKNWRTLPAKAGLNRCGKSCRLRWLNYL 65 89********************************************97 PP
2	Myb_DNA-binding	52.1	1.5e-16	71	115	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE++l+++++++lG++ W++Ia +++ gRt++++k++w+ + GSMUA_Achr11P23500_001 71 RGNISEEEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNAH 115 7899****************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.864	13	65	IPR017930	Myb domain
SMART	SM00717	7.0E-13	17	67	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.54E-28	17	112	IPR009057	Homeodomain-like
Pfam	PF00249	5.1E-16	18	65	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-23	19	72	IPR009057	Homeodomain-like
CDD	cd00167	4.60E-10	20	65	No hit	No description
PROSITE profile	PS51294	23.074	66	120	IPR017930	Myb domain
SMART	SM00717	7.0E-16	70	118	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-15	71	116	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-24	73	118	IPR009057	Homeodomain-like
CDD	cd00167	6.63E-12	75	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MVKKTQRGNK GVVVVANRGA WIAEEDQKLV EYVRIHGDKN WRTLPAKAGL NRCGKSCRLR 60 WLNYLRPGIK RGNISEEEED LIIRLHNLLG NRWSLIAGRL PGRTDNEIKN YWNAHLGKRP 120 LTIEDLNLKL NKRLEGTGGL TRPLPTRILA SRRDLVATAM DPGGGGGGGA AAEQLHSEFD 180 LERLLSLITN LDGSSSTGND VGTEADGSGS TLEFEFDDLD KFMNYEDDIG SYLLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-28	18	119	7	107	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226040	0.0	AC226040.1 Musa acuminata clone BAC MA4-48G3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009385269.1	1e-170	PREDICTED: transcription factor WER-like
TrEMBL	M0RUT0	1e-169	M0RUT0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P23500_001	1e-170	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17778	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	4e-54	myb domain protein 3