PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P23430_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 326aa    MW: 35800.6 Da    PI: 6.5911
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P23430_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-191461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd++lv++++++G g+W++ +++ g++R++k+c++rw +yl
  GSMUA_Achr11P23430_001 14 KGPWTPEEDKQLVEYIQRHGHGSWRSLPKMAGLNRCGKSCRLRWTNYL 61
                            79********************************************97 PP
2Myb_DNA-binding52.89.1e-1767112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+++++E+  +v+++  lG++ W+tI++ ++ gRt++++k++w+++l
  GSMUA_Achr11P23430_001  67 RGKFSEDEERMIVHLHSILGNK-WSTISKSLP-GRTDNEIKNYWNTHL 112
                             89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.363961IPR017930Myb domain
SuperFamilySSF466891.03E-3111108IPR009057Homeodomain-like
SMARTSM007175.8E-161363IPR001005SANT/Myb domain
PfamPF002491.4E-181461IPR001005SANT/Myb domain
CDDcd001676.29E-131661No hitNo description
PROSITE profilePS5129426.58262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2665116IPR009057Homeodomain-like
SMARTSM007176.4E-1666114IPR001005SANT/Myb domain
PfamPF002496.3E-1567112IPR001005SANT/Myb domain
CDDcd001673.43E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRSPCCDEI GVKKGPWTPE EDKQLVEYIQ RHGHGSWRSL PKMAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEDEERMIVH LHSILGNKWS TISKSLPGRT DNEIKNYWNT HLKKKLLLMG  120
IDPVTHTRRT NVDLLTILPT LLAAATNLGN LGDPLSNALR LQADAVHLVR LQTLIQAMST  180
AAPNMDAMNP SSSASLGTCY QFDDTQLNQQ LEGLANVPLA QGATGFPCLA SPFEEQEKVT  240
HPEGSSVTTG IKTEGHNGMT NPESSSCAAT TALSTQSPVP FPQERIATDC MQDPISSPAS  300
IPFQDWYGLS AGGSNDDMIC WKDILE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-30141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-30141164105C-Myb DNA-Binding Domain
1msf_C2e-30141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384729.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9S9Z22e-83MYB93_ARATH; Transcription factor MYB93
TrEMBLM0RUS30.0M0RUS3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P23430_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.25e-80myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]