PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P23160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family STAT
Protein Properties Length: 732aa    MW: 81571.2 Da    PI: 6.0792
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P23160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT187.31.8e-582523711119
                    STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrik 86 
                             l+vvll+a+g++v++++evvasLlyadsg++vek+ ddaeapLL+s+dG+e++s+drp+ llrGra++klkisqLsskcdnrLfr++
  GSMUA_Achr11P23160_001 252 LEVVLLDAFGRSVHREMEVVASLLYADSGTPVEKTrDDAEAPLLTSCDGLEYPSTDRPVMLLRGRATYKLKISQLSSKCDNRLFRVC 338
                             79*********************************9*************************************************** PP

                    STAT  87 feipklkkypfleavskpirCisrsrntrsssl 119
                             f+ ++ ++ypflea+s pirCisr+r++r+++ 
  GSMUA_Achr11P23160_001 339 FHPLHGQRYPFLEAYSCPIRCISRNRSNRTLGI 371
                             ****************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2007.3E-447182IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498992.57E-748187IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.109.7E-5630700IPR000980SH2 domain
SuperFamilySSF555503.89E-7631714IPR000980SH2 domain
PROSITE profilePS500019.381634732IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MADGEQCREE QYAKLEDLRI SLDRGGAGEE EGGDGEGEGE GEHGGGFGFS LCVWIYLSGS  60
ARPSSIILKQ VSGSSYEAPF LVLNEENKLI LLPLILIHKE APSSENPFPW TDMFHTAAEM  120
DCPLEKWFHV GCQVAENYMR LHVDGKLVGE KSLFVLSSKH CQDDMKKIIL VGNDGNLGGY  180
IYHVQVLPIS ASVSEHFVKN PPAKLSLDNS CILDGVEEGG DGVWSIVGGK CCKRKTHLKI  240
FGEASCRRNF SLEVVLLDAF GRSVHREMEV VASLLYADSG TPVEKTRDDA EAPLLTSCDG  300
LEYPSTDRPV MLLRGRATYK LKISQLSSKC DNRLFRVCFH PLHGQRYPFL EAYSCPIRCI  360
SRNRSNRTLG IGKRSLSTTV LLDEIHLLKA SDGLQAIRDV YGNGQLKASN QSDLKCSPQS  420
KHFKVEDNRS TTEVVANGSS EQRKNQEMRI NNFEGTDSGP SDSESTDLKD LDSRWSQNSV  480
VSDVAIFRYC LESTFERSMI LKQLIASASN EDIANFAEQV CLYSGCSHHR NQILVSKHLV  540
QEGDDTWNSI SRKNQRALWM DAISEINNKF MMVANSASRP LSGQDLEILR GIAGCGDDLG  600
REEFDRMWYW LYPVAFALSK DRINRIWKCL SPKWIEGFIT KEEGESALKG PGGLQKAGTF  660
VLRFPTSRSW PHPDAGSLIV AYVGTDCIIH HRLLSLDHRD RDSRLLQDLL LEEPELSQLG  720
RVVRQNSSSC AS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232236KRKTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384700.10.0PREDICTED: uncharacterized protein LOC103972189
TrEMBLM0RUP60.0M0RUP6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P23160_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75473135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.11e-155SH2 domain protein A