PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P23110_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 540aa    MW: 60097.4 Da    PI: 6.6932
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P23110_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.54.9e-15741135
                    GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                            C +Cg+t+TplWR+gp+ ++ LCnaCG ++r kg+
  GSMUA_Achr11P23110_001  7 CCHCGVTSTPLWRNGPSDKPVLCNACGSRWRTKGS 41
                            99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-8153IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-11544No hitNo description
CDDcd002026.13E-15653No hitNo description
Gene3DG3DSA:3.30.50.103.9E-12740IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.596740IPR000679Zinc finger, GATA-type
PfamPF003201.4E-12741IPR000679Zinc finger, GATA-type
PfamPF139191.5E-9270367IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPSDKPVLCN ACGSRWRTKG SLMNYVPQHA REGFAMDGLK  60
SSKIKNLSFK PKEQKLQMEK QRDGMLGSDC EMQYCDQNFH KIVKGIISNG SGSESAISGS  120
DSCVQFGSAD ASDVTGSVQS HVWDSLVPSK KRTFVTRPKP SPVEKLTKDL CSILHEDQYS  180
NLSIISEDDL LYDSGTPLGS SEIGYGGVLI NHPHSKSVEE ESEASSLPVD KSYTTNEGYS  240
GSPVNTESKR TSFLNSAATT QMSQEIVKRD KSSHENLNIL QDRDSPLSSA DLNVVINFEN  300
FMEYLTDEEQ QHLMKYLPSI DTAKPPETLK SMFAGPQFLK SLPYFQQLLQ EGVFDLSLSE  360
ANAEERRTLK RLVLLNCINL QWLEYYQQIK DASSKKIKGG NETSNRQNLP GLSNLASMKR  420
HQDKQNKTYP DLKSTMRSPK RVCRSEGMNP PSRCSTQLEP WDRGDSVDHD GACFSPRRIF  480
ASPPRRSSIL PPPPSIADDS EGDLLLDVTS GASFAEAELL YHPWKQKADH DKLPKYEGYI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384693.10.0PREDICTED: GATA transcription factor 26 isoform X1
TrEMBLM0RUP10.0M0RUP1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P23110_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.33e-96GATA transcription factor 26