PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P22870_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 604aa    MW: 66669.6 Da    PI: 6.9179
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P22870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.1e-2486187199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++
  GSMUA_Achr11P22870_001  86 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSI 170
                             89****************************996555555..8********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             vF   + +++el+v+++r+
  GSMUA_Achr11P22870_001 171 VFL--RAENGELCVGIRRA 187
                             ***..449999******97 PP
2Auxin_resp114.59.4e-38222305183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             a++ a+++++FevvY+Prast+eF+vk++ v++a+++++ +GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  GSMUA_Achr11P22870_001 222 AVKLAANGKPFEVVYYPRASTPEFCVKAAAVKAAIRIQWYPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLE 305
                             67899****************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-3783190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-2984189IPR015300DNA-binding pseudobarrel domain
CDDcd100173.43E-2285186No hitNo description
PROSITE profilePS5086313.19786188IPR003340B3 DNA binding domain
SMARTSM010195.3E-2386188IPR003340B3 DNA binding domain
PfamPF023621.8E-2286187IPR003340B3 DNA binding domain
PfamPF065073.8E-33222304IPR010525Auxin response factor
PROSITE profilePS5174517.206518598IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MKDNDKCLDS QLWHACAGGM VQMPAVNSRV YYFPQGHAEH AQGFTDEVFA KIQMAPIRGS  60
ELDCAEDDGL DLGMNGIDVC GKPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAD  120
PPVQTVIAKD VHGEVWKFRH IYRGTPRRHL LTTGWSTFVN QKKLVAGDSI VFLRAENGEL  180
CVGIRRAKKE DGKLMGGNGD DFDSSRGIRG RSQMRIDSVI EAVKLAANGK PFEVVYYPRA  240
STPEFCVKAA AVKAAIRIQW YPGMRFKMAF ETEDSSRISW FMGTISSVQV ADPIRWPNSP  300
WRLLEVTWDE PDLLQNVKRV SPWLVELVSN LPAIHLAHLS PPRKKPRILQ HPDFPFEGQC  360
PMPMVGTRHA QFGLSLSDVQ LNKLQTDLFH TGFHRLDHAT LPSRISTGVT AGNPTIRDKV  420
SCLLTISHPS QSLKKSCDGK PPQLVLFGQP ILTEEQVSLN KSENTTSHCA TGNSLSDENL  480
EKTVSMSDGS GSAINLKGSL EAFPSQKDHL ASEFGHWTGQ CKVFMESEDV GRTLDLSVLG  540
SYEELYGRLA DMFGTEKSEM VSHVLYKNAA GAVKHTGEEP FSDFMKSARR LTILTDTGSD  600
NIAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-79832651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384660.10.0PREDICTED: auxin response factor 18
RefseqXP_009384661.10.0PREDICTED: auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLM0RUL70.0M0RUL7_MUSAM; Auxin response factor
STRINGGSMUA_Achr11P22870_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]