PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P22820_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 303aa    MW: 35000.9 Da    PI: 8.5611
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P22820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.5e-181461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+W++eEd +lv++++++G g+W++ +++ g+ R++k+c++rw +yl
  GSMUA_Achr11P22820_001 14 RGAWSAEEDRILVEYIQRHGHGNWRAMPKKAGLLRCGKSCRLRWTNYL 61
                            89******************************99************97 PP
2Myb_DNA-binding50.93.5e-1667112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++T+eE++ ++ ++++lG++ W++Ia+ ++ gRt++++k+ w+++l
  GSMUA_Achr11P22820_001  67 RGNFTAEEEDTIISLHEKLGNK-WSAIAASLP-GRTDNEIKNLWHTHL 112
                             89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.796961IPR017930Myb domain
SuperFamilySSF466891.8E-3011108IPR009057Homeodomain-like
SMARTSM007171.9E-141363IPR001005SANT/Myb domain
PfamPF002492.4E-161461IPR001005SANT/Myb domain
CDDcd001671.32E-101661No hitNo description
PROSITE profilePS5129424.64662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2665116IPR009057Homeodomain-like
SMARTSM007171.1E-1366114IPR001005SANT/Myb domain
PfamPF002494.1E-1567112IPR001005SANT/Myb domain
CDDcd001672.16E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRAPCCEKV GLRRGAWSAE EDRILVEYIQ RHGHGNWRAM PKKAGLLRCG KSCRLRWTNY  60
LRPDIRRGNF TAEEEDTIIS LHEKLGNKWS AIAASLPGRT DNEIKNLWHT HLKKRMDPKE  120
ATQAPKKRRR KKKRDPKNES EPERVNPQAD ADSGNPRCDV IEVSAREEES YDSKEVAVID  180
ESFWLDEALS SFSSTTSDDM DFWLKVFMEA EHLEDLPRIN PADIKNQIRN KELIMTSLLM  240
LKPCFICMIS TEHKKNCGSH HLVFYTANLS LNESNMITKR NKYLYISNSM EVKTSEGFML  300
ALN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24121175109B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112133KKRMDPKEATQAPKKRRRKKKR
2125130KKRRRK
3125132KKRRRKKK
4125133KKRRRKKKR
5127133RRRKKKR
6127134RRRKKKRD
7128133RRKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384655.11e-144PREDICTED: myb-related protein Myb4
SwissprotQ7XBH42e-78MYB4_ORYSJ; Transcription factor MYB4
TrEMBLM0RUL20.0M0RUL2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P22820_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-71myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]