PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P22820_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 35000.9 Da PI: 8.5611 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +lv++++++G g+W++ +++ g+ R++k+c++rw +yl GSMUA_Achr11P22820_001 14 RGAWSAEEDRILVEYIQRHGHGNWRAMPKKAGLLRCGKSCRLRWTNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.5e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++ ++++lG++ W++Ia+ ++ gRt++++k+ w+++l GSMUA_Achr11P22820_001 67 RGNFTAEEEDTIISLHEKLGNK-WSAIAASLP-GRTDNEIKNLWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.796 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.32E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.646 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.16E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MGRAPCCEKV GLRRGAWSAE EDRILVEYIQ RHGHGNWRAM PKKAGLLRCG KSCRLRWTNY 60 LRPDIRRGNF TAEEEDTIIS LHEKLGNKWS AIAASLPGRT DNEIKNLWHT HLKKRMDPKE 120 ATQAPKKRRR KKKRDPKNES EPERVNPQAD ADSGNPRCDV IEVSAREEES YDSKEVAVID 180 ESFWLDEALS SFSSTTSDDM DFWLKVFMEA EHLEDLPRIN PADIKNQIRN KELIMTSLLM 240 LKPCFICMIS TEHKKNCGSH HLVFYTANLS LNESNMITKR NKYLYISNSM EVKTSEGFML 300 ALN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 12 | 117 | 5 | 109 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 133 | KKRMDPKEATQAPKKRRRKKKR |
2 | 125 | 130 | KKRRRK |
3 | 125 | 132 | KKRRRKKK |
4 | 125 | 133 | KKRRRKKKR |
5 | 127 | 133 | RRRKKKR |
6 | 127 | 134 | RRRKKKRD |
7 | 128 | 133 | RRKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384655.1 | 1e-144 | PREDICTED: myb-related protein Myb4 | ||||
Swissprot | Q7XBH4 | 2e-78 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | M0RUL2 | 0.0 | M0RUL2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P22820_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 2e-71 | myb domain protein 15 |
Publications ? help Back to Top | |||
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