PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P22590_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 201aa MW: 23327.9 Da PI: 5.6749 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.9 | 1.5e-30 | 16 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatg 87 p+GfrF+Pt e++++yL +kv+g+ l+ + ++e+d+y+++P +Lp ++ ++++w yfF+++++ + g + r+t +g Wk + GSMUA_Achr11P22590_001 16 PAGFRFRPTGIEILKYYLLNKVSGQALPYDGGFEEMDVYRHDPDQLPIDISDGHSRWaYFFVSTATPDEDGYDNVRSTPHGLWKLQR 102 89***************************888***************98888999999***************************** PP NAM 88 kdkevlsk..kgelvglkktLvfykgrap.kgektdWvmheyrl 128 d++v + +++++g k+++vfy+ +a+ ++ +t W m+eyrl GSMUA_Achr11P22590_001 103 PDRPVQDDddDDRVIGYKRSFVFYSTKAHcRSARTGWRMNEYRL 146 ******98777888**********775542678*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-33 | 10 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.676 | 15 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-18 | 16 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MASSEPQSPL PSYEFPAGFR FRPTGIEILK YYLLNKVSGQ ALPYDGGFEE MDVYRHDPDQ 60 LPIDISDGHS RWAYFFVSTA TPDEDGYDNV RSTPHGLWKL QRPDRPVQDD DDDDRVIGYK 120 RSFVFYSTKA HCRSARTGWR MNEYRLSRKF DRSKDDSQIS ACEIYILMED RASNHDYKAC 180 SERSKSQVER RMLVPVDSAQ A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-18 | 15 | 146 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385253.1 | 1e-149 | PREDICTED: NAC domain-containing protein 35-like | ||||
TrEMBL | M0RUI9 | 1e-148 | M0RUI9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P22590_001 | 1e-149 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12891 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 7e-19 | NAC domain containing protein 35 |