PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P20830_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 344aa    MW: 38062.4 Da    PI: 6.8414
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P20830_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.24e-182370148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT eEd  lvd+++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  GSMUA_Achr11P20830_001 23 RGPWTVEEDVVLVDYIAVHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 70
                            89********************************************97 PP

2Myb_DNA-binding53.94.2e-1776119146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GSMUA_Achr11P20830_001  76 RGNITPEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119
                             7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3481870IPR017930Myb domain
SuperFamilySSF466892.28E-3120117IPR009057Homeodomain-like
SMARTSM007172.1E-142272IPR001005SANT/Myb domain
PfamPF002492.7E-152370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-222477IPR009057Homeodomain-like
CDDcd001671.49E-112570No hitNo description
PROSITE profilePS5129424.24871125IPR017930Myb domain
SMARTSM007171.6E-1575123IPR001005SANT/Myb domain
PfamPF002496.5E-1676119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2478124IPR009057Homeodomain-like
CDDcd001671.95E-1280119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEFHETTCGS AIPPSEEEMD LRRGPWTVEE DVVLVDYIAV HGEGRWNSLA RCAGLRRTGK  60
SCRLRWLNYL RPDVRRGNIT PEEQLLILEL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR  120
VQKHAKQLKC DVNSKQFKDV MRYLWIPRLV ERIRAASGNS TVSPATSHRP EDPATELARV  180
KLSSETSSAA GSSSSDSFGM HYFSPPRVSD GFPTASMQGC EDNKGDVTGP TKLSSETSSA  240
AGSSSSDSFG IHYFSPPRVS DGFPAASMQG CEDNIGDVTG RTDFTTACWS ESLPSSNSGG  300
YADLGLTNLD QDRELMLDLH VHQVEVSISL TVRGSKCSSM NATR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25201234106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384442.10.0PREDICTED: transcription factor MYB108-like
TrEMBLM0RU130.0M0RU13_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P20830_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-85myb domain protein 78