PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P20830_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 344aa MW: 38062.4 Da PI: 6.8414 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 4e-18 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd lvd+++ +G g+W++ ar+ g++Rt+k+c++rw++yl GSMUA_Achr11P20830_001 23 RGPWTVEEDVVLVDYIAVHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 70 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.2e-17 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ GSMUA_Achr11P20830_001 76 RGNITPEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.348 | 18 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.28E-31 | 20 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-11 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 24.248 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-16 | 76 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-24 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.95E-12 | 80 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009620 | Biological Process | response to fungus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MEFHETTCGS AIPPSEEEMD LRRGPWTVEE DVVLVDYIAV HGEGRWNSLA RCAGLRRTGK 60 SCRLRWLNYL RPDVRRGNIT PEEQLLILEL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR 120 VQKHAKQLKC DVNSKQFKDV MRYLWIPRLV ERIRAASGNS TVSPATSHRP EDPATELARV 180 KLSSETSSAA GSSSSDSFGM HYFSPPRVSD GFPTASMQGC EDNKGDVTGP TKLSSETSSA 240 AGSSSSDSFG IHYFSPPRVS DGFPAASMQG CEDNIGDVTG RTDFTTACWS ESLPSSNSGG 300 YADLGLTNLD QDRELMLDLH VHQVEVSISL TVRGSKCSSM NATR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-25 | 20 | 123 | 4 | 106 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00334 | DAP | Transfer from AT3G06490 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384442.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | M0RU13 | 0.0 | M0RU13_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P20830_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-85 | myb domain protein 78 |