PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P19540_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26920.6 Da    PI: 8.9155
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P19540_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.3e-311059251
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            rienk+nrqvtf+kRrng+lKKA+ELSvLCdaevavi+fss+gklye++s
  GSMUA_Achr11P19540_001 10 RIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVAVIVFSSRGKLYEFCS 59
                            8***********************************************96 PP
2K-box88.71.1e-29831767100
                   K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                             +++e++  +s++qe+ kLk+++e Lqr+qR+llGedL+sLs+keL  Le+qL+ slk+iRs++++ +l+q+ +lq++e+ l e+nk 
  GSMUA_Achr11P19540_001  83 QAKENQLVQSSRQEYLKLKARLEALQRSQRNLLGEDLGSLSIKELDYLEKQLDMSLKEIRSTRTQQMLDQLTDLQRREQLLCEANKG 169
                             336777889****************************************************************************** PP

                   K-box  94 Lrkklee 100
                             Lr++lee
  GSMUA_Achr11P19540_001 170 LRRRLEE 176
                             ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.969161IPR002100Transcription factor, MADS-box
CDDcd002651.68E-44277No hitNo description
SuperFamilySSF554551.96E-33279IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.8E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-2487174IPR002487Transcription factor, K-box
PROSITE profilePS5129715.11990180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGRVELRR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVAVIVFSS RGKLYEFCSG  60
SSMMRTLERY QKCSYGGSES TIQAKENQLV QSSRQEYLKL KARLEALQRS QRNLLGEDLG  120
SLSIKELDYL EKQLDMSLKE IRSTRTQQML DQLTDLQRRE QLLCEANKGL RRRLEESSHA  180
NGGQLWENSA HPAAQQPHGD GLFYPLECQP TPQIGYQPDQ MPGTSVSTYM PAWLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A5e-32751741101Developmental protein SEPALLATA 3
4ox0_B5e-32751741101Developmental protein SEPALLATA 3
4ox0_C5e-32751741101Developmental protein SEPALLATA 3
4ox0_D5e-32751741101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8693070.0EU869307.1 Musa acuminata AAA Group MADS-box protein MADS1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384296.11e-174PREDICTED: MADS-box transcription factor 8
SwissprotQ9SAR11e-119MADS8_ORYSJ; MADS-box transcription factor 8
TrEMBLD4HM401e-172D4HM40_MUSAC; MADS-box protein MADS1
TrEMBLM0RTN41e-172M0RTN4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P19540_0011e-173(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34833469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-86MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Jang YH, et al.
    Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY.
    Plant Cell Physiol., 2009. 50(8): p. 1479-92
    [PMID:19561057]
  3. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]
  4. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]