PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P19510_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 191aa MW: 21168 Da PI: 7.0983 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.5 | 1e-07 | 84 | 124 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ ++L +A++Y+k L GSMUA_Achr11P19510_001 84 ARLRRERISERIRVLQRLVPGG-----TKMDTTSMLDEAIRYVKFL 124 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.557 | 75 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.15E-14 | 80 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-13 | 81 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-12 | 81 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-5 | 85 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.74E-6 | 97 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MGSQFLSNYI PLELPFHAHI HPPSFPRRGM EGDHEAEEEE ALGAVKEMMY RIAAMQPVDI 60 DPSTIKKPRR RNVRISDDPQ SVAARLRRER ISERIRVLQR LVPGGTKMDT TSMLDEAIRY 120 VKFLKRQVQE LQASPQSHAV HVGAVVDGNP VAGAEWSHAS SPSSSSSAMG APPPPVLEFG 180 FDEQGAHHPV H |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 89 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator required for seed dispersal. Involved in the differentiation of all three cell types required for fruit dehiscence. Acts as the key regulator in a network including SHP and ALC that controls specification of the valve margin. Works with ALC, SHP, and FUL to allow differentiation of the lignified valve layer, the spring-loaded mechanism of fruit that promotes opening. Regulates the expression of the YJ80 marker. {ECO:0000269|PubMed:15035986}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By FUL, which restrict its expression to the margins. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065018 | 1e-84 | BT065018.1 Zea mays full-length cDNA clone ZM_BFc0135I21 mRNA, complete cds. | |||
GenBank | EU974197 | 1e-84 | EU974197.1 Zea mays clone 442660 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384290.2 | 1e-138 | PREDICTED: transcription factor HEC3-like | ||||
Swissprot | O81313 | 9e-43 | IND_ARATH; Transcription factor IND | ||||
TrEMBL | M0RTN1 | 1e-137 | M0RTN1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P19510_001 | 1e-137 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9051 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09750.1 | 4e-37 | bHLH family protein |