PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P18520_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 829aa    MW: 92219.8 Da    PI: 6.4383
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P18520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.21e-20127233198
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE........EEETTEEEE-TTHHHHHHHHT- CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy......rkksgryvltkGWkeFvkangL 74 
                             f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++ +       ++++r++lt+GW+ Fv+a++L
  GSMUA_Achr11P18520_001 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPVQ--ELVARDLHDNEWKFRHVFrvsvhnAGQPKRHLLTTGWSTFVSAKRL 211
                             99****************************986555545..8***************99999998889999**************** PP

                             -TT-EEEEEE-SSSEE..EEEEE- CS
                      B3  75 kegDfvvFkldgrsefelvvkvfr 98 
                              +gD+v+F   ++++ +l+++++ 
  GSMUA_Achr11P18520_001 212 VAGDSVLFI--WNENNQLLLGIRH 233
                             *********..7888888999886 PP
2Auxin_resp121.27.6e-40259342183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wr Lk
  GSMUA_Achr11P18520_001 259 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRALK 342
                             79*********************************9789******************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.55E-46112262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-39119248IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-18126225No hitNo description
PfamPF023621.4E-18127234IPR003340B3 DNA binding domain
SMARTSM010194.8E-18127235IPR003340B3 DNA binding domain
PROSITE profilePS5086312.153127235IPR003340B3 DNA binding domain
PfamPF065075.6E-35259342IPR010525Auxin response factor
SuperFamilySSF542771.83E-7687772No hitNo description
PfamPF023099.2E-8688781IPR033389AUX/IAA domain
PROSITE profilePS5174520.735696780IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MRLTSSNIPN QSEEEETRCL NSELWHTCAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
INSQIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDP YLPNDLGTSN  120
KQPTNFFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPVQELVAR DLHDNEWKFR  180
HVFRVSVHNA GQPKRHLLTT GWSTFVSAKR LVAGDSVLFI WNENNQLLLG IRHANRPQTF  240
MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLAKYV KAVYHTRVSV  300
GMRFRMLFET EESSVRRYMG TITGISDLDP ARWPNSHWRA LKVGWDESTA GEKQPRVSLW  360
EIEPLTTFPM YPSSFPVRLK RPWPTGLPFF HGGNDDIDLN LPLMRLRDGG NPAIQSLNFQ  420
GVGVTPWMQP RLDALMLGLQ PDMCQAMTTG ALREMRTIDP TKQVSPAMLQ FQQPQNSANI  480
STPTLPSPIL QHVQTFLQAT QDNQQNLHLL TPHCQQIQQQ KILCGYQEVP YVASNLLQLS  540
SSSQSQSTTL HMISPSCQLK DFPDSNGNSV SASNASPLHG IFQQNSSEET SQLSLPKYGQ  600
PVTSSPCRDG NMDMQNQHLF GVNVDLSILA QNGIPSLNTG VSEICSTNLS YATCNLLSSS  660
GNDFPINRAL SGCNGLDESR FLRSHENVDQ ANPQSGLFVK VYKSGSFGRT LDITKFSSYH  720
DLRSELGCLF GLEGQLEDPL RSGWQLVFVD WENDVLLVGD DPWQEFVNSV SYIKILSPEE  780
VQQMGKQGID FVNSAPVKRL QRNGCDDHVS QQDSTNLSAR ITSVGSFKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1602036351388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384195.10.0PREDICTED: auxin response factor 17 isoform X1
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLM0RTD20.0M0RTD2_MUSAM; Auxin response factor
STRINGGSMUA_Achr11P18520_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]