PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P18170_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NF-YC | ||||||||
Protein Properties | Length: 307aa MW: 34406.1 Da PI: 6.6267 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 174.2 | 1.3e-54 | 163 | 267 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 ql++fw +q ie+++df+nh+lPlarikki+kadedv+mis+eaPv+++kacelfileltlr+w+h+eenkrrtl+k+diaaavt GSMUA_Achr11P18170_001 163 QLQAFWDNQtleIEQTSDFRNHSLPLARIKKIMKADEDVRMISSEAPVVFAKACELFILELTLRAWIHTEENKRRTLQKNDIAAAVT 249 89******99999************************************************************************** PP NF-YC 85 rtdifdflvdivprdelk 102 rtdifdflvdivprdelk GSMUA_Achr11P18170_001 250 RTDIFDFLVDIVPRDELK 267 ***************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.4E-33 | 151 | 257 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-22 | 185 | 248 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 7.6E-38 | 186 | 263 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MESDSPRDQF VPTPTRTRYS RWNTYIRLLV LSRCFAFLRV PDEEKDTAFV GIVASPPSPL 60 DACSWLAQNC KETGRSVLVM DQSTQPLQPV MGIVTGAAQI AYVAPAYQPA SIVTGAPAAA 120 GTLPTPPTSA FTTNQTQLAS QHQVAYQQVQ QFHHQQQQHQ QQQLQAFWDN QTLEIEQTSD 180 FRNHSLPLAR IKKIMKADED VRMISSEAPV VFAKACELFI LELTLRAWIH TEENKRRTLQ 240 KNDIAAAVTR TDIFDFLVDI VPRDELKDDG LGILRAALPT VATRSPTTFT DLILIIGHSK 300 NTYIWTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-54 | 171 | 263 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 241 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384155.1 | 1e-144 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_009384157.1 | 1e-144 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q655V5 | 2e-79 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | M0RT97 | 0.0 | M0RT97_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P18170_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2703 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 7e-68 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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