PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P17870_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 287aa    MW: 32031 Da    PI: 5.7735
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P17870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161663148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W+ eEd +l+  ++++G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr11P17870_001 16 KGSWSLEEDMRLIAHIQKHGHGNWRALPKLAGLLRCGKSCRLRWTNYL 63
                            799*****************************99************97 PP
2Myb_DNA-binding55.99.7e-1869114148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++T+eE++ +v+++k+lG++ W++Ia++++ gRt++++k+ w+++l
  GSMUA_Achr11P17870_001  69 RGNFTKEEEDTIVKLHKLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114
                             89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-23766IPR009057Homeodomain-like
PROSITE profilePS5129414.1061163IPR017930Myb domain
SuperFamilySSF466898.2E-3113110IPR009057Homeodomain-like
SMARTSM007175.3E-131565IPR001005SANT/Myb domain
PfamPF002491.3E-141663IPR001005SANT/Myb domain
CDDcd001671.57E-101863No hitNo description
PROSITE profilePS5129424.99364118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2667118IPR009057Homeodomain-like
SMARTSM007171.6E-1568116IPR001005SANT/Myb domain
PfamPF002499.6E-1669114IPR001005SANT/Myb domain
CDDcd001671.06E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRGRAPCCA KVGLNKGSWS LEEDMRLIAH IQKHGHGNWR ALPKLAGLLR CGKSCRLRWT  60
NYLRPDIKRG NFTKEEEDTI VKLHKLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRLVF  120
TEQKPAATND PEEPPPTSSS SSSNHGGNKS HEHQHDPCLH TRDSSAEVIE IPIDPTMDMS  180
SIFDDALSNM TSSSTSTQLS DGLVIPDGDL WSMIEDNSAC KEGNTGAWLE YLERELELEL  240
GLREVAPSDQ DSLTTDGVGM EEDPVSCYFR KEPPLHPLQT FLASEMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-291411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385187.10.0PREDICTED: myb-related protein Zm1-like
SwissprotP200242e-75MYB1_MAIZE; Myb-related protein Zm1
TrEMBLM0RT670.0M0RT67_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P17870_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56160.11e-65myb domain protein 72
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]