PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P17840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 448aa    MW: 48231.6 Da    PI: 7.4733
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P17840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.6e-13292337454
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  Av YI++L
  GSMUA_Achr11P17840_001 292 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAVSYINEL 337
                             799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.1E-3562220IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.301288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-18289355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.55E-15291342No hitNo description
PfamPF000102.3E-10292337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17292351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-16294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MNLWADDNAS LMEAFMGTTD LQGFPWATAT APPTPTPPAA AALGPATALA SAAPAYFSQE  60
TLQQRLQALI EGARESWTYG IFWQTSVDGA TGAYFLGWGD GYYKGCEEDK RKQRVANAVS  120
AVEQEHRRRV LRELHSLISG GGSSAPDETV DEEALFAGAP VWVAGADRLA SAPCERARQA  180
QLFGLQTMVC VPVGSGVLEL GSTDVVSHSH EIMGKIRVLF LFSSPDLPSS STAAAGCTGA  240
TSRVSNQEAG MLCFSSAPAR APSNGQMKSS GGGKRPRKRG RKPANGREEP LNHVEAERQR  300
REKLNQRFYA LRAVVPNVSK MDKASLLGDA VSYINELRSN LQTLEADKEE TTTNGRCHGV  360
EMEVKILGSE AMIRLQCQKR NHPAASLMAA LKDLDLELHY ASVSVVKDLM IQQVTVKMSP  420
GRVMTQEQLC ASLYSRVAAE APISSSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-44572234195Transcription factor MYC3
4rqw_B1e-44572234195Transcription factor MYC3
4rs9_A1e-44572234195Transcription factor MYC3
4yz6_A1e-44572234195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273281KRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384126.11e-137PREDICTED: transcription factor MYC2-like
TrEMBLM0RT640.0M0RT64_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P17840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.14e-60bHLH family protein