PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P17780_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 396aa MW: 44051.6 Da PI: 6.1925 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.4 | 6.2e-45 | 6 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...........................kvkaeekewy 59 l pGfrF+Ptd+elv +yLk+kv+g +el + i+ v++yk++PwdLp + + +++ ew+ GSMUA_Achr11P17780_001 6 LLPGFRFRPTDDELVGYYLKRKVDGLGTEL-DLIPVVQLYKYDPWDLPgNaarkekdielistsvpwlfmhvslyksFLPKRDMEWF 91 579************************999.99**************954899*******999999999988766543334788*** PP NAM 60 fFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 fF++rd+ky++g r+nrat+sgyWkatgkd+++ + + ++ l+ktLvfy+grap ge+ dWvm+eyrl GSMUA_Achr11P17780_001 92 FFCPRDRKYPNGLRTNRATASGYWKATGKDRKIAC-EPSVFALRKTLVFYRGRAPGGERMDWVMNEYRL 159 ***********************************.8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-16 | 4 | 59 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.232 | 6 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.4E-26 | 8 | 159 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-34 | 70 | 182 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MTTSSLLPGF RFRPTDDELV GYYLKRKVDG LGTELDLIPV VQLYKYDPWD LPGNAARKEK 60 DIELISTSVP WLFMHVSLYK SFLPKRDMEW FFFCPRDRKY PNGLRTNRAT ASGYWKATGK 120 DRKIACEPSV FALRKTLVFY RGRAPGGERM DWVMNEYRLC ENLHEGSSNF VGGFALCRVI 180 KRNVHGMKTG DLHGESKAKR CPSSSDAFKF DPKGYSGKVL NSLEENSSRV TKVSHRSTDS 240 TPIASPDADR EIDSEMRGFW ESQVVSDASK TSLVDRGISS SMITIGNTAE REASPPSNLS 300 PFSVDLIEEE FGVVGGFPGS GSLLAFPSPA YCMGLYGNAR DITYQSLELD APRDPSASHS 360 GTETWNTTAP ASVCRQAGEG EDESLWLHED NLVVVI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-44 | 1 | 188 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-44 | 1 | 188 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-44 | 1 | 188 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-44 | 1 | 188 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-44 | 1 | 188 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-44 | 1 | 188 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-44 | 1 | 188 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-44 | 1 | 188 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-44 | 1 | 188 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-44 | 1 | 188 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-44 | 1 | 188 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-44 | 1 | 188 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-44 | 1 | 188 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-44 | 1 | 188 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385186.1 | 0.0 | PREDICTED: NAC domain-containing protein 45-like | ||||
TrEMBL | M0RT58 | 0.0 | M0RT58_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P17780_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6209 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 8e-72 | NAC domain containing protein 71 |