PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P17770_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 118aa    MW: 12769.6 Da    PI: 9.9308
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P17770_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA658.1e-215993135
                    GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                            Cs Cg tkTplWR+gpdg+k+LCnaCG++yrk+ +
  GSMUA_Achr11P17770_001 59 CSACGETKTPLWRNGPDGPKSLCNACGIRYRKEAK 93
                            ********************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.9E-1953104IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.2445389IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-155699No hitNo description
Gene3DG3DSA:3.30.50.103.0E-165793IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.37E-145890No hitNo description
PfamPF003201.1E-185993IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MAYDLVGFSS TPTSSSSSSP KPLVERDFLS RVEERNYGMS GLDVSLSLSP PLMVIGKRCS  60
ACGETKTPLW RNGPDGPKSL CNACGIRYRK EAKKINTNLT LAPPDHVVQL SAKGNRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385185.12e-82PREDICTED: GATA transcription factor 4-like
TrEMBLM0RT575e-81M0RT57_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P17770_0018e-82(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.15e-17GATA transcription factor 20