PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P17740_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARR-B
Protein Properties Length: 482aa    MW: 55004 Da    PI: 8.4091
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P17740_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.81.2e-28232286156
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                             k++++WtpeLH+rFv+aveqL G+e+A+P++ilelmkv+gLt+++v+SHLQkYR++
  GSMUA_Achr11P17740_001 232 KTKVDWTPELHRRFVQAVEQL-GIEQAIPSKILELMKVEGLTRHNVASHLQKYRMH 286
                             6799*****************.********************************96 PP
2Response_reg26.14.3e-10201261109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHT..TTSEEEEEESTTTH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireee..pklpiivvtahgee 83 
                             +l+ +++++ +   ++ le+ +y  v    + e+ale + +    +++ ++ +      +++ + + r+ e  +++p iv++++   
  GSMUA_Achr11P17740_001  20 ILLLQKDEASAAETKSKLEEMDY-LVSLYHSEEDALEAISKDAesFHVSIVEVT-----ASDSCGTFRFLEmaQDIPTIVISDEHCL 100
                             68888999999999999******.***************777767***999955.....55555566655555699*********** PP

                             HHHHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  84 edalealkaGakdflsKpfdpeelvk 109
                             +++ +++ +Ga +fl Kp ++++l++
  GSMUA_Achr11P17740_001 101 STMMKCIALGAAEFLQKPLSEDKLRN 126
                             ***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-1116134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.8E-1217152No hitNo description
PROSITE profilePS5011018.87519132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-521127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129416.163229288IPR017930Myb domain
SuperFamilySSF466892.81E-19230289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-28230289IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-26232286IPR006447Myb domain, plants
PfamPF002498.8E-8235284IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVGATDDFVV WKDFPKRLKI LLLQKDEASA AETKSKLEEM DYLVSLYHSE EDALEAISKD  60
AESFHVSIVE VTASDSCGTF RFLEMAQDIP TIVISDEHCL STMMKCIALG AAEFLQKPLS  120
EDKLRNIWQH VVHKALNAGG SVLSKSLKPI KDTVVSMLRI QSETSEHKIE EKVTEIDGKH  180
GCEKTMANDR LSAPSTPQLE RGRFPPDREF QDKKKSVLDY SYLNGGRNNR KKTKVDWTPE  240
LHRRFVQAVE QLGIEQAIPS KILELMKVEG LTRHNVASHL QKYRMHRRHI LPKDQDRRWQ  300
PHRDSTARGC ISRPILAYPP YHPNCGAPTN QIYPVWGHPN YRSHGVQMWG HAGYTAWHPP  360
PQSWPWKTYP LVRADAWGCP VVTQYGQYRM SSPHTTDRFE FHRLLCIHRH IRGMEIKSVL  420
KWQVEMIDQL VKETMSKPWL PLPLGLKSPS TDVVLAELNR QGICTVPPAT NAASPDPNDF  480
CG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-17234286355Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384114.11e-174PREDICTED: two-component response regulator-like APRR2
RefseqXP_009384117.11e-174PREDICTED: two-component response regulator-like APRR2
RefseqXP_009384119.11e-174PREDICTED: two-component response regulator-like APRR2
RefseqXP_009384120.11e-174PREDICTED: two-component response regulator-like APRR2
RefseqXP_018676386.11e-174PREDICTED: two-component response regulator-like APRR2
TrEMBLM0RT540.0M0RT54_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P17740_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2076367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.53e-59ARR-B family protein