PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P17710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 323aa    MW: 36563.7 Da    PI: 10.7406
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P17710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.11.5e-2057149287
                trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergf.erspkqCkekwenlnkrykkikegekkr.t.sessstcpy 81 
                             Wt++e+laLi+a+r+++ +lrrg+l++ +W+ev++ +     +++   +s++qC++k e+l+kry+ +++ + +  +     s+++y
  GSMUA_Achr11P17710_001  57 WTHEETLALIDAYRDKWYALRRGNLRASHWQEVADDVarrcPSGPSpPKSSVQCRHKVEKLRKRYRSERHKSLQLdSsLAPASSWVY 143
                             **********************************999666533344489*******************9988776431334568*** PP

                trihelix  82 fdqlea 87 
                             f++++a
  GSMUA_Achr11P17710_001 144 FRKMDA 149
                             ****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-2157150No hitNo description
PROSITE profilePS500906.23757118IPR017877Myb-like domain
SMARTSM005951.8E-864155IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MRSLSKSSAT LHTFMLLNSS SRNLSPSPIP LPASLPPPPH SAVAAASGSR RLAAPIWTHE  60
ETLALIDAYR DKWYALRRGN LRASHWQEVA DDVARRCPSG PSPPKSSVQC RHKVEKLRKR  120
YRSERHKSLQ LDSSLAPASS WVYFRKMDAM EHGGGAVSGP RRPSASPSPA PPRPPSDDDE  180
EEEEEEDDDD YDGRRGTGGG SNTRSMHRLM ANGRGAIGEL RFTIPKAVRS KEMRRKMEKK  240
RRKRRLEMES SAVREMVSAL RMLGDGFLRM EQKKMEMARE MEKVRMEMEL KRTELILDSQ  300
RRIVDAFLKG FSGKKRTKVS PED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237245EKKRRKRRL
2238242KKRRK
3238244KKRRKRR
4238245KKRRKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384106.11e-148PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLM0RT510.0M0RT51_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P17710_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-34Trihelix family protein