PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P17690_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 448aa    MW: 50357.9 Da    PI: 8.6701
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P17690_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.97.7e-15741135
                    GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                            C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  GSMUA_Achr11P17690_001  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                            99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.1E-9153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-10543No hitNo description
CDDcd002026.52E-15653No hitNo description
Gene3DG3DSA:3.30.50.101.2E-11740IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003201.5E-12741IPR000679Zinc finger, GATA-type
PfamPF139191.5E-8284382IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLMNYIPLHA RESFNSDELE  60
VPKIKRISFK PKEQKLQKKR HGNSALELER EMKYCDQNFH KILEADTSNR SCSDSAISGS  120
ESCVYFGTTD AKSDLTVCFS GSAQSNAWDS LVPSKKRTFI TRLRPKPSPV EKLTRDLYSI  180
LHEEQASNLS RTSEDDLLYE SGTPFGSSEI GYGGLLIKHP NARLVEEESE ASSLPVDRSY  240
IISVGYSGST SIPVNTENKG SSILNPGTDT KKSTAQMTQE SAKRDKISHQ KLNILQDRNS  300
PLSSADLHAF INFESFMKYL TCEEQQQLMK YLPSIDTAKS PESLRSMFTS PQFLETLSYY  360
QQMHQEGVFD LSMSGANAEE CRTLKRLVLL NYTNHKWSEC YQKIKDAPSN KKKGNAKLNR  420
KNLSDLSKLA SLKRHHERQN ENCPGLVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018676428.10.0PREDICTED: GATA transcription factor 26-like isoform X1
TrEMBLM0RT490.0M0RT49_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P17690_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-100GATA transcription factor 26