PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P17620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 419aa    MW: 45370 Da    PI: 7.7441
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P17620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.3e-30236294259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed+++++ tYeg+Hnh+
  GSMUA_Achr11P17620_001 236 GDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQVQRCAEDKTLLVATYEGNHNHP 294
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.4E-32220296IPR003657WRKY domain
SuperFamilySSF1182903.53E-27229296IPR003657WRKY domain
PROSITE profilePS5081128.713230296IPR003657WRKY domain
SMARTSM007745.4E-35235295IPR003657WRKY domain
PfamPF031061.0E-25237294IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDRPVQETML LCLADDTEST NPIKEVDFFS QNRRQDVAEG RQGDAEDSPA HGATYVHTGL  60
DLLTVNSQAS KEEKKPKNKL TTLRIELIRV RDENRRLRSM MDQLTQSYTA LQCQLLQVMR  120
QREHEIRHTQ VGKMCVSVPE GESSAHQFMQ PHPTRMWSIN GNSKDDDDDR EHSSSLNISS  180
NDHSIIPSAE RVDVFSEGNN GPMPMQESSC ADTSSDLPRR RARVSVRARS NARMIGDGCQ  240
WRKYGQKMAK GNPCPRAYYR CTMAIGCPVR KQVQRCAEDK TLLVATYEGN HNHPLPPAAK  300
ALASTTSAAA AMLLSGSTGS GGFLQSAFPT VALDLTQSVN PLQQLPQAHP AALGLQRGAM  360
VDTVTAAITT DPNFAAALAA AVTSIMGSAP ASAAGASSGP HVVPGSPQLP KSCTTFSTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21222298176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385182.10.0PREDICTED: probable WRKY transcription factor 47
SwissprotQ9XEC32e-70WRK42_ARATH; WRKY transcription factor 42
TrEMBLM0RT420.0M0RT42_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P17620_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.12e-46WRKY family protein