PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P17190_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 26426.1 Da PI: 5.7143 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.3e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed+ll++ v+++G g+W+++++ g++R++k+c++rw +yl GSMUA_Achr11P17190_001 16 KGPWTVQEDQLLIEHVTLHGEGQWNSVSKLSGLRRSGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.2e-15 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ + ++++++G++ W++Iar ++ gRt++++k++w+++ GSMUA_Achr11P17190_001 69 RGSITPQEENTIQELHALWGNR-WSAIARSLP-GRTDNEIKNYWRTH 113 7889******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.934 | 11 | 67 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 13 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.12E-29 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-15 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.38E-10 | 18 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-24 | 67 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.331 | 68 | 118 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.4E-14 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-9 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MDGQLGWGTT EDGWRKGPWT VQEDQLLIEH VTLHGEGQWN SVSKLSGLRR SGKSCRLRWV 60 NYLRPDLKRG SITPQEENTI QELHALWGNR WSAIARSLPG RTDNEIKNYW RTHFKKDNTP 120 RKKAERARAR LLVRQQQERQ KHKQQQQEAE DMGGTSTMKQ VEEDAMRAEE VQEMAYVLQG 180 GGFQGYMSDE DGSWGCLWNL DDDDDASEYT EGGSTSQQVS SSTNISFFIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 16 | 116 | 7 | 106 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384058.1 | 1e-160 | PREDICTED: transcription factor MYB114-like | ||||
TrEMBL | M0RSZ9 | 1e-170 | M0RSZ9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P17190_001 | 1e-170 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 1e-62 | myb domain protein 79 |