PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P16860_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 556aa    MW: 62888.6 Da    PI: 8.2607
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P16860_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.42.3e-5661311128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhPtdeel+v+yLk+k++g+ +el e+i+evd+yk+ePwdLp +   ++ ewyfFs+rd+ky++g+r+nrat++gyWkatg
  GSMUA_Achr11P16860_001   6 LPPGFRFHPTDEELIVYYLKRKINGRMIEL-EIIPEVDLYKCEPWDLPGTNICKDLEWYFFSPRDRKYPNGSRTNRATQAGYWKATG 91 
                             79****************************.99***************54445788******************************* PP

                     NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             kd++v s ++++vg+kktLvfy grap+g++tdWvmheyrl
  GSMUA_Achr11P16860_001  92 KDRKVNS-QRRAVGMKKTLVFYGGRAPHGSRTDWVMHEYRL 131
                             *******.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-634157IPR003441NAC domain
PROSITE profilePS5100560.2156157IPR003441NAC domain
PfamPF023655.9E-307131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI VYYLKRKING RMIELEIIPE VDLYKCEPWD LPGTNICKDL  60
EWYFFSPRDR KYPNGSRTNR ATQAGYWKAT GKDRKVNSQR RAVGMKKTLV FYGGRAPHGS  120
RTDWVMHEYR LDEKECENAA SGLQVCDAYA LCRVFKKTAP GPKIIEQYGA PYQAHSQWID  180
GAFPNDACSS VMMQGASLDA TTPVVGNRMP HASEQTLGGG SFSYTPTKVD MVVQCARVQH  240
RLSLPPSEVE EFPHFMHPGN FLETSNQVDT FPLVNSTDMW VGTNPHFDEL SSLLELDRGD  300
DERGTRFFQR TDCVSSGNFG EPTKLIEITE ATYVILVFFT LRSVLFVSQM DESRALLDGI  360
DAKPIFSQSQ PDEFAVGFVD IDHETDMFAA TTPEFDACNK VEFNHGLFVS HAGKTKTFFH  420
HVEPSKKVSF HLNPTGRQDA VAETSELATK AGGRFSFFSR FKAFVRDKLM GKSSLLRNGR  480
RVNEMLEIVA VLRTETAYSI MNMKKKKKKK AKETWKCRGS VQESNIWFPD VSMRGISRMF  540
LRGKLPFLAF ASGVNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-57116312171NO APICAL MERISTEM PROTEIN
1ut4_B4e-57116312171NO APICAL MERISTEM PROTEIN
1ut7_A4e-57116312171NO APICAL MERISTEM PROTEIN
1ut7_B4e-57116312171NO APICAL MERISTEM PROTEIN
3swm_A4e-57116315174NAC domain-containing protein 19
3swm_B4e-57116315174NAC domain-containing protein 19
3swm_C4e-57116315174NAC domain-containing protein 19
3swm_D4e-57116315174NAC domain-containing protein 19
3swp_A4e-57116315174NAC domain-containing protein 19
3swp_B4e-57116315174NAC domain-containing protein 19
3swp_C4e-57116315174NAC domain-containing protein 19
3swp_D4e-57116315174NAC domain-containing protein 19
4dul_A4e-57116312171NAC domain-containing protein 19
4dul_B4e-57116312171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1503509KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385171.10.0PREDICTED: NAC domain-containing protein 86-like isoform X1
RefseqXP_018676036.10.0PREDICTED: NAC domain-containing protein 86-like isoform X1
TrEMBLM0RSW60.0M0RSW6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P16860_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66243651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-107NAC domain containing protein 28