PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P16130_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 262aa    MW: 29704.4 Da    PI: 6.5116
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P16130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-181966148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT eEd+ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  GSMUA_Achr11P16130_001 19 RGPWTVEEDLLLMNYIAAHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 66
                            89********************************************97 PP
2Myb_DNA-binding51.91.8e-1672115146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T+eE++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  GSMUA_Achr11P16130_001  72 RGNITPEEQLLILELHSRWGNR-WSKIAQFLP-GRTDNEIKNYWRT 115
                             7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.6841470IPR017930Myb domain
SuperFamilySSF466891.01E-3116113IPR009057Homeodomain-like
SMARTSM007175.7E-151868IPR001005SANT/Myb domain
PfamPF002491.1E-161966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-232073IPR009057Homeodomain-like
CDDcd001671.25E-112166No hitNo description
SMARTSM007178.1E-1571119IPR001005SANT/Myb domain
PROSITE profilePS5129418.93371121IPR017930Myb domain
PfamPF002492.6E-1572115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2374120IPR009057Homeodomain-like
CDDcd001671.18E-1176115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEFHGSITPQ SVEEMDLRRG PWTVEEDLLL MNYIAAHGEG RWNSLARCAG LRRTGKSCRL  60
RWLNYLRPDV RRGNITPEEQ LLILELHSRW GNRWSKIAQF LPGRTDNEIK NYWRTRVQKH  120
AKQLKCDVNS KQFKDVMRYL WMPRLIERIR VASGDPTAVE PAAHWTPELA PVNPSPDNSS  180
TAGSPSLQFS PQPVPDICAD CSTRQGDGNG GDVIQPGEFA ASWSASALSP GGDAHLGLLD  240
FDQIQWGDSL WTVEDIWLQQ QF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251011918126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0924984e-76FP092498.1 Phyllostachys edulis cDNA clone: bphyem114b06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383942.10.0PREDICTED: transcription factor MYB108
SwissprotQ10MB42e-89MYB2_ORYSJ; Transcription factor MYB2
TrEMBLM0RSP30.0M0RSP3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P16130_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.14e-88myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]