PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P15910_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 233aa    MW: 27158.2 Da    PI: 10.4082
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P15910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.9e-181461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g W++eEde+l++ ++++G g+W+t+++  g+ R++k+c++rw +yl
  GSMUA_Achr11P15910_001 14 KGLWSPEEDEKLIKHINKYGHGCWSTVPNQAGLQRCGKSCRLRWINYL 61
                            678*******************************************97 PP

2Myb_DNA-binding49.41.1e-1567109145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             rg ++++E++l++++++ lG++ W++Ia++++ gRt++++k+ w+
  GSMUA_Achr11P15910_001  67 RGTFSQQEEDLIIELHAVLGNR-WSKIAAHLP-GRTDNEIKNLWN 109
                             899*******************.*********.*********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-27664IPR009057Homeodomain-like
PROSITE profilePS5129417.169961IPR017930Myb domain
SMARTSM007179.9E-141363IPR001005SANT/Myb domain
SuperFamilySSF466893.41E-3013108IPR009057Homeodomain-like
PfamPF002494.4E-161461IPR001005SANT/Myb domain
CDDcd001677.03E-121761No hitNo description
PROSITE profilePS5129425.01562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2565116IPR009057Homeodomain-like
SMARTSM007178.5E-1466114IPR001005SANT/Myb domain
PfamPF002491.4E-1467109IPR001005SANT/Myb domain
CDDcd001677.65E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGGHSCCHKQ KPRKGLWSPE EDEKLIKHIN KYGHGCWSTV PNQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEEDLIIE LHAVLGNRWS KIAAHLPGRT DNEIKNLWNS SIKKKLTQRG  120
IDPSSHKPLM EDLKWSEYLH GAFQSQPMYG DIKTGNQSPM NTVSSLYQNQ QLRQELQASD  180
IHGKRRRLTK DRTLVHYVFS SYMYTNKKRI KRKMIKCQPY SFTFPATKEL SLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183187KRRRL
2206213KKRIKRKM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383921.13e-92PREDICTED: myb-related protein Myb4-like
SwissprotQ8VZQ22e-76MYB61_ARATH; Transcription factor MYB61
TrEMBLM0RSM11e-175M0RSM1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P15910_0011e-175(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.38e-80myb domain protein 55
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]