PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P15560_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 159aa MW: 17787.5 Da PI: 10.4522 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.4 | 5.9e-26 | 12 | 61 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqv fskRr g++KKA+EL vLCdaev +++fs+ gklye+ss GSMUA_Achr11P15560_001 12 RIEDRTSRQVRFSKRRSGLFKKAYELAVLCDAEVGLLVFSPAGKLYEFSS 61 8***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.2E-35 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.59 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.45E-36 | 4 | 73 | No hit | No description |
SuperFamily | SSF55455 | 7.33E-27 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-28 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-26 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-28 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-28 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MAPRRGKVEL RRIEDRTSRQ VRFSKRRSGL FKKAYELAVL CDAEVGLLVF SPAGKLYEFS 60 SVSSQCTSAS SHWVFLMRTT FDSHRGYFTS IINPASLRRS TSSEIAFCRS GANFLGLCFI 120 GLAPGSMLSW CWATSWSIPG ISLEDHTNTS VFLLRKSIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 3e-16 | 5 | 63 | 2 | 60 | Myocyte-specific enhancer factor 2A |
3mu6_B | 3e-16 | 5 | 63 | 2 | 60 | Myocyte-specific enhancer factor 2A |
3mu6_C | 3e-16 | 5 | 63 | 2 | 60 | Myocyte-specific enhancer factor 2A |
3mu6_D | 3e-16 | 5 | 63 | 2 | 60 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M0RSI6 | 1e-112 | M0RSI6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P15560_001 | 1e-112 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 7e-25 | AGAMOUS-like 14 |