PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P14990_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 448aa MW: 48764.9 Da PI: 6.421

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P14990_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.6e-10	226	284	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l +l+ l+ e+ GSMUA_Achr11P14990_001 226 KRAKRILANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLTMLQRDTNGLTVEN 284 9**********************************************998887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.6E-17	222	286	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.001	224	287	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-8	226	278	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.03E-11	226	277	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.6E-11	226	280	No hit	No description
CDD	cd14703	1.03E-23	227	276	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MDKDKSPASG GGGGGSGGGF PSHSSRYAPF GSSSGSFGFI GDHPSASSSS QPPPDSGQFG 60 HATRSDAERF SYDVSRMPDF PPRNPGHRRA HSEILSLPDD ISFDGDLGVV GSYDGPSLSD 120 ETEEDLVSMY MDVEKFSSGA TSSGLSIGES SLPVLSPVQA PSEGENVAFG STERPRIRHQ 180 HSQSLDGSTA IKPELLMSGG EGPSSVEAKK AMSAAKLAEL ALVDPKRAKR ILANRQSAAR 240 SKERKMRYIA ELERKVQTLQ TEATTLSAQL TMLQRDTNGL TVENNELKLR LQTMEQQVHL 300 QDALNEALRE EVQRLKLATG QMLPNGGQMV NLVPSSFGAN QQFYHHNQGM QSLLAAHQLQ 360 QLQIHSQHPQ QLQQQPQQQQ PLHSQTPQHQ QQPQPHQTQQ QPQQQQALHP LTLQQQRQPP 420 AADLRLKGPL TSQNQLGEMA SDEQNAHE

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MDKDKSPASG GGGGGSGGGF PSHSSRYAPF GSSSGSFGFI GDHPSASSSS QPPPDSGQFG  60
HATRSDAERF SYDVSRMPDF PPRNPGHRRA HSEILSLPDD ISFDGDLGVV GSYDGPSLSD  120
ETEEDLVSMY MDVEKFSSGA TSSGLSIGES SLPVLSPVQA PSEGENVAFG STERPRIRHQ  180
HSQSLDGSTA IKPELLMSGG EGPSSVEAKK AMSAAKLAEL ALVDPKRAKR ILANRQSAAR  240
SKERKMRYIA ELERKVQTLQ TEATTLSAQL TMLQRDTNGL TVENNELKLR LQTMEQQVHL  300
QDALNEALRE EVQRLKLATG QMLPNGGQMV NLVPSSFGAN QQFYHHNQGM QSLLAAHQLQ  360
QLQIHSQHPQ QLQQQPQQQQ PLHSQTPQHQ QQPQPHQTQQ QPQQQQALHP LTLQQQRQPP  420
AADLRLKGPL TSQNQLGEMA SDEQNAHE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009383807.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-137	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	M0RSC9	0.0	M0RSC9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P14990_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-140	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]