PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P14240_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 228aa MW: 25971.7 Da PI: 8.6039 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.3 | 2.1e-18 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rqvt+skR+ g+ KA+ELS+LCd++ +++f+++gk GSMUA_Achr11P14240_001 9 KRLENSNSRQVTYSKRKIGLTNKAKELSILCDIDLVLLMFAPNGK 53 789****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.016 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-25 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 6.29E-22 | 2 | 54 | No hit | No description |
SuperFamily | SSF55455 | 1.16E-22 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-16 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.4E-18 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-16 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-16 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGRVKLKIKR LENSNSRQVT YSKRKIGLTN KAKELSILCD IDLVLLMFAP NGKPTICVGD 60 RSNTEEVVAR FAQVSQQEKG KKACSNSHWL LNKTFKKLDH DVDIQEFLGS STQTVEEITN 120 HWSSLHGQLL DVQKRLSNWA DPDKIDNINH ITTMEQSLKE SLGQIQVHKE NFGKQLISVD 180 YSGQVKCLFS RVLPFKCCEQ GASPVSWLHI NDDQQLMLPQ DANLLPWR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018675710.1 | 1e-125 | PREDICTED: agamous-like MADS-box protein AGL65 | ||||
TrEMBL | M0RS54 | 1e-168 | M0RS54_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P14240_001 | 1e-169 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4626 | 36 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 2e-66 | AGAMOUS-like 65 |