PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr11P13440_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 199aa MW: 21981.9 Da PI: 6.8001 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46 | 9.4e-15 | 16 | 62 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L GSMUA_Achr11P13440_001 16 KSHSEAERRRRERINTHLARLRSLLPST-----TKTDKASLLAEVIQHVKEL 62 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.882 | 13 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-12 | 16 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.81E-4 | 16 | 65 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.6E-15 | 17 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-15 | 17 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-13 | 19 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 5.5E-5 | 99 | 171 | No hit | No description |
CDD | cd04873 | 2.56E-5 | 99 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MTPQEIMDAK ALAASKSHSE AERRRRERIN THLARLRSLL PSTTKTDKAS LLAEVIQHVK 60 ELKRQTLEMA EDSPLPTETD ELTVDATNDE DGRFLVRASL CCDDRSDLLP DLIKALKVLK 120 LRTLKAEIAT LGGRIKHVLV ITGEDGADHQ QPEQSVASIQ DALRAVMERA SSTDEPTAAG 180 GIKRQRTTTL SSTLEHRSI |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 21 | 26 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009383631.1 | 1e-138 | PREDICTED: transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 3e-71 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | M0RRX4 | 1e-139 | M0RRX4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P13440_001 | 1e-139 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68810.1 | 5e-66 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|