PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P13200_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 315aa    MW: 35529.1 Da    PI: 6.2472
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P13200_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-141871148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                            rg+WT +Ed ll ++v+ +G g+W++ ar+        ++Rt+k+c++rw++yl
  GSMUA_Achr11P13200_001 18 RGPWTLQEDTLLTHYVACHGEGRWNLLARCSAfvddvgLRRTGKSCRLRWLNYL 71
                            89**************************************************97 PP
2Myb_DNA-binding506.9e-1677120146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ ++eE++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  GSMUA_Achr11P13200_001  77 RGNLSPEEQLLILELHSKWGNR-WSRIAQFLP-GRTDNEIKNYWRT 120
                             7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.5851371IPR017930Myb domain
SuperFamilySSF466896.36E-3015118IPR009057Homeodomain-like
SMARTSM007171.4E-111773IPR001005SANT/Myb domain
PfamPF002493.2E-121871IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-201978IPR009057Homeodomain-like
CDDcd001674.86E-92071No hitNo description
PROSITE profilePS5129425.06272126IPR017930Myb domain
SMARTSM007171.5E-1476124IPR001005SANT/Myb domain
PfamPF002497.3E-1577120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2379125IPR009057Homeodomain-like
CDDcd001673.45E-1281120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSGKGGSSNQ DEDMELRRGP WTLQEDTLLT HYVACHGEGR WNLLARCSAF VDDVGLRRTG  60
KSCRLRWLNY LKPDIKRGNL SPEEQLLILE LHSKWGNRWS RIAQFLPGRT DNEIKNYWRT  120
RVQKQARQLK IDANSAMFRD AIRCYWMPRL LEKTASPRSL QTPHHGTATA VADQPPQDPL  180
LQLLRPGMQC QFENPSSYEL SGAEFCRPSN SPGLPSSTVL PQLPDLPEFS PNPPNQLNDI  240
EFNPFHGNSS IEFNAYGSEA CDLASVTASA VSYPASSSCD ANNEYCMNKI GDSLWSMDEL  300
YVMLKSYMEG VACFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23151264108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383607.10.0PREDICTED: transcription factor MYB108-like
TrEMBLM0RRV00.0M0RRV0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P13200_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-78myb domain protein 62