PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P10700_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 937aa    MW: 104453 Da    PI: 6.477
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P10700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.74.9e-33654711260
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  GSMUA_Achr11P10700_001 654 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSV-DGQITEIVYKGTHNHPK 711
                             8****************************************.***************85 PP

2WRKY103.61.1e-32806864159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+
  GSMUA_Achr11P10700_001 806 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDLRAVITTYEGKHNHD 864
                             59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF112044.9E-25108186IPR021369Protein of unknown function DUF2985
PfamPF047493.6E-8306410IPR006461PLAC8 motif-containing protein
TIGRFAMsTIGR015711.1E-13314411IPR006461PLAC8 motif-containing protein
Gene3DG3DSA:2.20.25.804.6E-28649712IPR003657WRKY domain
SuperFamilySSF1182903.4E-25652712IPR003657WRKY domain
SMARTSM007742.8E-36653711IPR003657WRKY domain
PROSITE profilePS5081123.87654712IPR003657WRKY domain
PfamPF031062.4E-25654710IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-36791866IPR003657WRKY domain
SuperFamilySSF1182905.1E-29798866IPR003657WRKY domain
PROSITE profilePS5081138.366801866IPR003657WRKY domain
SMARTSM007744.4E-38806865IPR003657WRKY domain
PfamPF031065.3E-25807864IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 937 aa     Download sequence    Send to blast
MASSANTSGD DELESCTAQT APQLGEYRLG IPPLQETLLD PRKSSSASMD HWLKQLKLSS  60
PLGILRRTLD QREEISLSVP SPAGIRRRFH VRFFHKIDWR SLFATCRDWI RNPMNIALLI  120
WLICVGISAT MLGLLLLGLL NDAFPTKSLR NHWIEINNQV LNALFTLMSV YQHPTLFHQL  180
VMLCRWSSED VTELRKVYCK DGGYRPHEWA HMVVVLLLLH TTCFAQYILC GLYWGYARRQ  240
RPEWLEDFFF GLGLAAPVFA ALYTVYSPLG SESNSNSMSD EESQCGKHGL KMHDQGSVVS  300
KPKWVGGLLD RLGFGNMYVH TVTFLLLCAA PFWIFNIAAL NIHDYVIGDV VGIAGVVLCA  360
FGLLYGGYWR IQMRRRFKLP GDRFCLGSAS LTDYVKWMLC WSCSLAQEVR TGNLYEVGDD  420
SLFSKHHCEA ETQNSEGGCD GAAVPIEEMT PPIPPLIQLQ DVVGEGDDGD TVRPPPTLSS  480
SSAQEEDEEE SMLHTEFARD FIVVDGVGLP KFKSSPPPSL PIFPPPISPS SYFAIPAGLS  540
PAELLDSPVL LSSSIFPSPT TGSFASQAFN WRGTATAYPQ DIKDEDKSYS DFSFQTQAIN  600
GTTQASSFLP SSAPIPSEHH RQPWMQARAD GSRSLESNPA HCAQPVQTLQ RRSDDGYNWR  660
KYGQKQVKGS ENPRSYYKCT YPNCPTKKKV ERSVDGQITE IVYKGTHNHP KPQSNKRNST  720
ARATAPSEAN EHSLIESAAT PENSSTSFGD DDLEISKPGA DEYDEDEPDA KRWKECGEGE  780
GGAAAGNRTV REPRVVVQTM SDIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTTIGCPVR  840
KHVERASHDL RAVITTYEGK HNHDVPAARG SGAQLLNRPT SDINNNSSNN NFNMAIRPSA  900
TESHQYQMVT DSRQTDGTLI KAKEEQRDDT FFKSLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-35654867878Probable WRKY transcription factor 4
2lex_A8e-35654867878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ484297e-65Z48429.1 A.fatua mRNA for DNA-binding protein (clone ABF1).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383299.10.0PREDICTED: uncharacterized protein LOC103971077
TrEMBLM0RR500.0M0RR50_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P10700_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-103WRKY DNA-binding protein 33