PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P10700_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 937aa MW: 104453 Da PI: 6.477 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.7 | 4.9e-33 | 654 | 711 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k GSMUA_Achr11P10700_001 654 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSV-DGQITEIVYKGTHNHPK 711 8****************************************.***************85 PP | |||||||
2 | WRKY | 103.6 | 1.1e-32 | 806 | 864 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+ GSMUA_Achr11P10700_001 806 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDLRAVITTYEGKHNHD 864 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF11204 | 4.9E-25 | 108 | 186 | IPR021369 | Protein of unknown function DUF2985 |
Pfam | PF04749 | 3.6E-8 | 306 | 410 | IPR006461 | PLAC8 motif-containing protein |
TIGRFAMs | TIGR01571 | 1.1E-13 | 314 | 411 | IPR006461 | PLAC8 motif-containing protein |
Gene3D | G3DSA:2.20.25.80 | 4.6E-28 | 649 | 712 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-25 | 652 | 712 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-36 | 653 | 711 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.87 | 654 | 712 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-25 | 654 | 710 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-36 | 791 | 866 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-29 | 798 | 866 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.366 | 801 | 866 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-38 | 806 | 865 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-25 | 807 | 864 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 937 aa Download sequence Send to blast |
MASSANTSGD DELESCTAQT APQLGEYRLG IPPLQETLLD PRKSSSASMD HWLKQLKLSS 60 PLGILRRTLD QREEISLSVP SPAGIRRRFH VRFFHKIDWR SLFATCRDWI RNPMNIALLI 120 WLICVGISAT MLGLLLLGLL NDAFPTKSLR NHWIEINNQV LNALFTLMSV YQHPTLFHQL 180 VMLCRWSSED VTELRKVYCK DGGYRPHEWA HMVVVLLLLH TTCFAQYILC GLYWGYARRQ 240 RPEWLEDFFF GLGLAAPVFA ALYTVYSPLG SESNSNSMSD EESQCGKHGL KMHDQGSVVS 300 KPKWVGGLLD RLGFGNMYVH TVTFLLLCAA PFWIFNIAAL NIHDYVIGDV VGIAGVVLCA 360 FGLLYGGYWR IQMRRRFKLP GDRFCLGSAS LTDYVKWMLC WSCSLAQEVR TGNLYEVGDD 420 SLFSKHHCEA ETQNSEGGCD GAAVPIEEMT PPIPPLIQLQ DVVGEGDDGD TVRPPPTLSS 480 SSAQEEDEEE SMLHTEFARD FIVVDGVGLP KFKSSPPPSL PIFPPPISPS SYFAIPAGLS 540 PAELLDSPVL LSSSIFPSPT TGSFASQAFN WRGTATAYPQ DIKDEDKSYS DFSFQTQAIN 600 GTTQASSFLP SSAPIPSEHH RQPWMQARAD GSRSLESNPA HCAQPVQTLQ RRSDDGYNWR 660 KYGQKQVKGS ENPRSYYKCT YPNCPTKKKV ERSVDGQITE IVYKGTHNHP KPQSNKRNST 720 ARATAPSEAN EHSLIESAAT PENSSTSFGD DDLEISKPGA DEYDEDEPDA KRWKECGEGE 780 GGAAAGNRTV REPRVVVQTM SDIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTTIGCPVR 840 KHVERASHDL RAVITTYEGK HNHDVPAARG SGAQLLNRPT SDINNNSSNN NFNMAIRPSA 900 TESHQYQMVT DSRQTDGTLI KAKEEQRDDT FFKSLLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-35 | 654 | 867 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-35 | 654 | 867 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | Z48429 | 7e-65 | Z48429.1 A.fatua mRNA for DNA-binding protein (clone ABF1). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009383299.1 | 0.0 | PREDICTED: uncharacterized protein LOC103971077 | ||||
TrEMBL | M0RR50 | 0.0 | M0RR50_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P10700_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2992 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 1e-103 | WRKY DNA-binding protein 33 |