PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P10490_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 394aa    MW: 44966.8 Da    PI: 8.2802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P10490_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.5e-1791136147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg W + Ed +l+++v q+G+++W++Ia+++  gR++k+c++rw++ 
  GSMUA_Achr11P10490_001  91 RGHWRPSEDAKLKELVSQYGPHNWNLIAEKLE-GRSGKSCRLRWFNQ 136
                             899*****************************.***********996 PP
2Myb_DNA-binding46.21e-14143186146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             r +++ eEde+l+  ++ +G++ W++Iar ++ gRt++ +k+ w+ 
  GSMUA_Achr11P10490_001 143 RRAFSVEEDEKLLAFHRVYGNK-WSLIARFFP-GRTDNAVKNQWHV 186
                             6789******************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.42986137IPR017930Myb domain
SMARTSM007175.0E-1590139IPR001005SANT/Myb domain
PfamPF002493.7E-1691136IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-2891184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-2692144IPR009057Homeodomain-like
CDDcd001673.48E-1394135No hitNo description
PROSITE profilePS5129423.951138192IPR017930Myb domain
SMARTSM007174.6E-14142190IPR001005SANT/Myb domain
PfamPF002494.4E-12143185IPR001005SANT/Myb domain
CDDcd001671.19E-10145185No hitNo description
Gene3DG3DSA:1.10.10.601.9E-19145191IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MIFLLFFNHL SYKYSFLFFG FLLLLLLSRL HVDLFLHDNQ LIGGEWYERR VPSEEHEGIE  60
ALNRRLGAEE ESERSNGRRV HEDKQPKSSG RGHWRPSEDA KLKELVSQYG PHNWNLIAEK  120
LEGRSGKSCR LRWFNQLDPR INRRAFSVEE DEKLLAFHRV YGNKWSLIAR FFPGRTDNAV  180
KNQWHVIMAR KKREQCSRYM RRKAFTTSPD HWTQALPQMM NMSSGHNAWS GDSSITSTRD  240
ESTSTCTGLP LTPSACRFMP WLQIKSVSCA GLDEKLQTRR NGCNEKPGEP GTVFNNGKAP  300
MVELAMGSGH FAYSDASFEG SATDPAANHT NNAFLQAERD GGTNKISARF IDFLALFVHC  360
ITSFADTDPT KYDLIFICSL SPFSVLHLHD CTCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30911917107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383272.10.0PREDICTED: uncharacterized protein LOC103971054 isoform X1
TrEMBLM0RR290.0M0RR29_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P10490_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.12e-64myb domain protein 117