PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P10320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 263aa    MW: 30405.4 Da    PI: 7.7926
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P10320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35211122102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++
  GSMUA_Achr11P10320_001  21 FLTKTYQLVDDACTDHIVSWGEDHTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIAADR---------WEFANEYFRR 98 
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             g+k+ll++i+r+k+
  GSMUA_Achr11P10320_001  99 GEKHLLTEIHRRKT 112
                             ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-3811105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5617110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.63E-3318110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.6E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MERSEEMMGS MESPKQVPPP FLTKTYQLVD DACTDHIVSW GEDHTTFVVW RPPEFARDLL  60
PNYFKHNNFS SFVRQLNTYG FRKIAADRWE FANEYFRRGE KHLLTEIHRR KTPQVPHSLH  120
YQPPQHYHQS PQPLHPAYEV NSWIETPLAV SGGDTNFLSA LSEDNQRLRK NNSLLLTELT  180
RMKKLYNDIV CFIQQHVTAV DHPVQRLVAY PRQTGLLALP ELHCSKNQSS VTLIQATDNT  240
LKLFGVPIHG NKTLDETTTA KNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-221111211122Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383247.10.0PREDICTED: heat stress transcription factor B-4b-like
SwissprotQ7XHZ02e-81HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLM0RR120.0M0RR12_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P10320_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-74heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]