PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P09160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 275aa    MW: 30890.5 Da    PI: 8.4921
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P09160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-165398147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            r  W +eEd +l ++v+++G+ +Wk+Ia+++  gR++k+c++rw++ 
  GSMUA_Achr11P09160_001 53 RSHWRPEEDCKLRELVALHGPQNWKLIAAKLH-GRSGKSCRLRWFNQ 98
                            678*****************************.***********996 PP
2Myb_DNA-binding55.21.7e-17105149147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ +
  GSMUA_Achr11P09160_001 105 RRAFSEEEEEKLMAAHRLYGNK-WAMIARFFP-GRTDNAVKNHWHVL 149
                             678*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8054899IPR017930Myb domain
SMARTSM007176.7E-1452101IPR001005SANT/Myb domain
SuperFamilySSF466892.1E-2853146IPR009057Homeodomain-like
PfamPF002499.2E-165398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-2655106IPR009057Homeodomain-like
CDDcd001671.40E-135697No hitNo description
PROSITE profilePS5129427.032100154IPR017930Myb domain
SMARTSM007177.0E-15104152IPR001005SANT/Myb domain
PfamPF002492.9E-14105149IPR001005SANT/Myb domain
CDDcd001674.85E-12107150No hitNo description
Gene3DG3DSA:1.10.10.609.5E-21107153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MLFMSSLSMN PSSAVDSRSP HEVGDSHADA TAEGNASGET ANEGGGQSSF CARSHWRPEE  60
DCKLRELVAL HGPQNWKLIA AKLHGRSGKS CRLRWFNQLD PRINRRAFSE EEEEKLMAAH  120
RLYGNKWAMI ARFFPGRTDN AVKNHWHVLM ARKYREQSSA CRKRRLKRME EATLNTSGEE  180
GSYDFLLGSN VPSNTGFCSN NSVFWGGPAD DSSRFHSSTV LMTATCYHSD ISRVSSTESP  240
PFTESTSVSP PFIDFLGLSF SWKYFSALLC KHSRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-305615310107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383150.10.0PREDICTED: myb-like protein AA
RefseqXP_018675916.10.0PREDICTED: myb-like protein AA
RefseqXP_018675917.10.0PREDICTED: myb-like protein AA
RefseqXP_018675918.10.0PREDICTED: myb-like protein AA
RefseqXP_018675919.10.0PREDICTED: myb-like protein AA
RefseqXP_018675920.10.0PREDICTED: myb-like protein AA
RefseqXP_018675921.10.0PREDICTED: myb-like protein AA
TrEMBLM0RQP60.0M0RQP6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P09160_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-68myb domain protein 105