PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P09110_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 156aa MW: 17855.2 Da PI: 9.8646 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.7e-07 | 13 | 51 | 3 | 39 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 +W+ Ed+l+ a + g +W++Ia+ ++ gR++ + GSMUA_Achr11P09110_001 13 PWSRAEDKLFETALVVYSEGtpdRWSAIAEQLP-GRSAAE 51 8*****************99*************.***976 PP | |||||||
2 | Myb_DNA-binding | 46.7 | 7.1e-15 | 77 | 121 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ ++G+g+W+ I+r k+Rt+ q+ s+ qk+ GSMUA_Achr11P09110_001 77 PWTEEEHRLFLEGLSKYGKGDWRNISRWAVKTRTPTQVASHAQKF 121 8******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 9.6E-6 | 10 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.71E-12 | 10 | 61 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-7 | 12 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.364 | 13 | 60 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 7.9E-6 | 13 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.82E-5 | 13 | 60 | No hit | No description |
PROSITE profile | PS51294 | 20.345 | 70 | 126 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.14E-18 | 72 | 126 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-17 | 73 | 125 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.3E-10 | 74 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-12 | 76 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.38E-10 | 77 | 122 | No hit | No description |
Pfam | PF00249 | 1.8E-11 | 77 | 120 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MFSGQQLAGV PRPWSRAEDK LFETALVVYS EGTPDRWSAI AEQLPGRSAA EAWERYQALV 60 HDCDMIERGM ERKRGVPWTE EEHRLFLEGL SKYGKGDWRN ISRWAVKTRT PTQVASHAQK 120 FFIRQSQNAG KSRETKRKSI HDITCPSPSS SMSCLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009382952.1 | 1e-96 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-42 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | M0RQP1 | 1e-113 | M0RQP1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P09110_001 | 1e-113 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-48 | MYB family protein |
Publications ? help Back to Top | |||
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