PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P09000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 438aa    MW: 49302.3 Da    PI: 4.2645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P09000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.62.9e-5061341129
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                             lppGfrFhPtd elv++yLk+kv gk++++ e+i+ev++yk+ PwdL++  ++++++ ewyfF++rdkky++g+r+nrat+ gyWka
  GSMUA_Achr11P09000_001   6 LPPGFRFHPTDVELVSFYLKRKVMGKPFRF-EAIAEVELYKFAPWDLREksQLRSKDLEWYFFCPRDKKYPSGSRSNRATDIGYWKA 91 
                             79***************************9.89**************84236666777***************************** PP

                     NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                             tgkd+++++ ++++vg+kktL+f++g+  kg++tdWvm eyrle
  GSMUA_Achr11P09000_001  92 TGKDRPIIH-NTSTVGMKKTLIFHEGKPLKGSRTDWVMYEYRLE 134
                             *********.9999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-602156IPR003441NAC domain
PROSITE profilePS5100556.1286156IPR003441NAC domain
PfamPF023652.9E-267133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAMTSLPPGF RFHPTDVELV SFYLKRKVMG KPFRFEAIAE VELYKFAPWD LREKSQLRSK  60
DLEWYFFCPR DKKYPSGSRS NRATDIGYWK ATGKDRPIIH NTSTVGMKKT LIFHEGKPLK  120
GSRTDWVMYE YRLENREMAD AGLVQDTFVL CKIFQKSGAG PKIGEQYGAP FNEEDWEDEA  180
STENPFPLPC VSCPSQLPLD NQTIQLEPVS QQPAASSHIE VSSDPDLLVA DGIFQEELAE  240
VCNSSPRVEN ANATAFMMPD SAILDMNVNE TSALDAEGMY NELENLSDQA IISGSTNHPE  300
NISSETALYP MLSELDSEQY VELNDILFTG ISNLPDTIML NDPFAWNPSA HFPNFQDLTY  360
IPDPISYLNN EAITAMYDPL QAGPCIMGEQ PSLNMQIEDC WEIISHLNAP VSEHEHYHPL  420
QEFLHPASVA HSGDLSQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-48215711169Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382937.10.0PREDICTED: NAC domain-containing protein 82-like isoform X1
RefseqXP_009382938.10.0PREDICTED: NAC domain-containing protein 82-like isoform X1
TrEMBLM0RQN00.0M0RQN0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P09000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.18e-80NAC domain containing protein 103