PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P08970_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 335aa    MW: 37730.3 Da    PI: 8.7328
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P08970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.66.2e-50231482128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                             +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg 
  GSMUA_Achr11P08970_001  23 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYNYDPWELPALAAMGEKEWFFYVPRDRKYKNGDRPNRVTASGYWKATGA 108
                             79***************************.89***************8777899********************************* PP

                     NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             d+ + +++++ +glkktLvfy+g+apkg +t+W+m+eyrl
  GSMUA_Achr11P08970_001 109 DRLIRDEGNRSIGLKKTLVFYSGKAPKGIRTTWIMNEYRL 148
                             **************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-5621168IPR003441NAC domain
PROSITE profilePS5100555.46222169IPR003441NAC domain
PfamPF023656.5E-2524148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAVAAAMSGD GGGGDGHEHD VVMPGFRFHP TEEELIEFYL RRKVEGKRFN VELITFLDLY  60
NYDPWELPAL AAMGEKEWFF YVPRDRKYKN GDRPNRVTAS GYWKATGADR LIRDEGNRSI  120
GLKKTLVFYS GKAPKGIRTT WIMNEYRLPR SDTDQHKKAE ISICRVYKRA GVEGRHRLPL  180
ASKPSWSSSR GTGTDRRHNS CWHQQRPDFQ LGGDSSWSAA ALSTANSLSS TTSTDEDGTS  240
ARMIDELNRL VGFNQNYVNY NPHLLPFTAL PISVPAVSDK LWEWNSLHET GRESTTGFKI  300
IVLGAEHGIS VPPQACDRAI VFSSDTSFHK IHFNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-552416919165NO APICAL MERISTEM PROTEIN
1ut4_B3e-552416919165NO APICAL MERISTEM PROTEIN
1ut7_A3e-552416919165NO APICAL MERISTEM PROTEIN
1ut7_B3e-552416919165NO APICAL MERISTEM PROTEIN
4dul_A3e-552416919165NAC domain-containing protein 19
4dul_B3e-552416919165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382935.10.0PREDICTED: NAC domain-containing protein 35-like
TrEMBLM0RQM70.0M0RQM7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P08970_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.17e-97NAC domain containing protein 35