PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P08470_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 518aa    MW: 56721.9 Da    PI: 6.8101
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P08470_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.9e-0770111641
                zf-B_box   6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                             C+ +++  ++lfC+ +   lC  C  + H        H ++p
  GSMUA_Achr11P08470_001  70 CEYCGDAAATLFCRADAARLCVACDRHVHAAnalsqkHVRSP 111
                             ******99*******************995566777776655 PP
2zf-B_box23.98.4e-08110161342
                zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg............Htvvpl 42 
                              ++C++++++++   C  ++  lC+dC   +H g            Ht+vp+
  GSMUA_Achr11P08470_001 110 SPICDNCGSQPAAARCAADGLALCADCDWDSHGGggdggggghqhhHTRVPI 161
                             689*****************************66999999998887887776 PP
3CCT43.61e-154815091644
                     CCT  16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             +++K+irYesRKa+A++R+RvKGrFvk++
  GSMUA_Achr11P08470_001 481 RYDKRIRYESRKARADTRKRVKGRFVKST 509
                             69*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.0E-1365112IPR000315B-box-type zinc finger
PROSITE profilePS5011910.82265112IPR000315B-box-type zinc finger
PfamPF006431.5E-570112IPR000315B-box-type zinc finger
CDDcd000212.17E-870112No hitNo description
PROSITE profilePS501199.015108161IPR000315B-box-type zinc finger
PfamPF006432.7E-5110160IPR000315B-box-type zinc finger
CDDcd000214.88E-5111139No hitNo description
SMARTSM003360.81113161IPR000315B-box-type zinc finger
PROSITE profilePS5101710.487466508IPR010402CCT domain
PfamPF062031.5E-10481508IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MGVEGGAVLH KWWASAFPSR FRELKVSGRV LLLIRRRRLV ENDSCGERLV LETGMAEENG  60
GVDGRRGVGC EYCGDAAATL FCRADAARLC VACDRHVHAA NALSQKHVRS PICDNCGSQP  120
AAARCAADGL ALCADCDWDS HGGGGDGGGG GHQHHHTRVP IDGFSGCPTA LELAASWGLD  180
LSVKEASHPP PLNPMPDQLF SNWSTMDSTL DVDPLFRDLY VPCAPKISSM VRRQKNPQSK  240
HPLFQQLMEL AKTELTASTA CDLSPSTPCQ TGRGHEELRE SQPMPYTSLL MLAPTELKGT  300
DRLVEEEDLL WDCGPPEQPA QIWDFNLGRF RDQKESYALE FAYGTNNEGF MIKSYNDLLK  360
ENPFATTKVL EDIGDANCPS NDDFLSPNVR HMQSQTLSTI NTTAKWKHSS NYPAVKGPTA  420
TGNNMSTMIR PLVASSHEHG SAGGAKQISF GEPLIGNEVV KEIKKLDNEL LVKNRGDAML  480
RYDKRIRYES RKARADTRKR VKGRFVKSTE ALDVGNGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382880.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
TrEMBLM0RQH70.0M0RQH7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P08470_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.27e-49B-box type zinc finger protein with CCT domain