PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P08290_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 245aa MW: 27024.3 Da PI: 8.5993 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.3 | 3.7e-29 | 118 | 177 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y+rC++a C+vkkkv+rsaed ++++ tYegeH h GSMUA_Achr11P08290_001 118 VKDGYQWRKYGQKVTRDNPCPRAYFRCSFApACSVKKKVQRSAEDASMLVATYEGEHSHG 177 58***************************99***************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 24.524 | 113 | 179 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.1E-28 | 115 | 178 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-24 | 116 | 178 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-33 | 118 | 178 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-24 | 119 | 176 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDLTSSVDLD LTIGSLRFDG EKLSVEENKK EALEAELGRA NEENKRLKEM LSDMAASYST 60 LRSHMTGVVM PKTSSCKRDD ARSSSSEESS KRVKEEERKP KVSKLYVLTD PSDSSLVVKD 120 GYQWRKYGQK VTRDNPCPRA YFRCSFAPAC SVKKKVQRSA EDASMLVATY EGEHSHGQSS 180 RPEAPHASGR SAPAPPRPQE VEPPNPQRSL VEQMAVSLTN NPDFRAAMAA AISGRMSETS 240 PPPTK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-19 | 117 | 176 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-19 | 117 | 176 | 16 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009382857.1 | 0.0 | PREDICTED: WRKY transcription factor WRKY71-like | ||||
Swissprot | Q0DAJ3 | 2e-60 | WRK28_ORYSJ; WRKY transcription factor WRKY28 | ||||
TrEMBL | M0RQF9 | 1e-179 | M0RQF9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P08290_001 | 1e-180 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1822 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25000.1 | 8e-46 | WRKY DNA-binding protein 60 |