PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P08210_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 348aa    MW: 37830.9 Da    PI: 7.4762
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P08210_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.5e-081758338
                zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                             r+C+ ++   + l+C  +  +lC +C    H g       H+
  GSMUA_Achr11P08210_001 17 GRRCDSCKGAAALLYCGADAAYLCGECDARVH-GasllalhHE 58
                            689******99******************999.5477777665 PP
2zf-B_box284.5e-0960105342
                zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                              ++C+ +e+ ++ + C+ +   lC  C   +H        H+++p+
  GSMUA_Achr11P08210_001  60 VWVCEVCEQAPAAFTCKADAAALCVACDADIHAAnplarrHERIPI 105
                             689*****************************66788888999886 PP
3CCT69.11.1e-23261305145
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                             Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++e
  GSMUA_Achr11P08210_001 261 REARVMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRSE 305
                             9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.00171553IPR000315B-box-type zinc finger
PROSITE profilePS501199.3991562IPR000315B-box-type zinc finger
PfamPF006431.0E-51758IPR000315B-box-type zinc finger
CDDcd000216.23E-71862No hitNo description
SMARTSM003363.5E-1558105IPR000315B-box-type zinc finger
PROSITE profilePS5011910.87958105IPR000315B-box-type zinc finger
PfamPF006433.0E-759105IPR000315B-box-type zinc finger
CDDcd000215.43E-961105No hitNo description
PROSITE profilePS5101716.886261303IPR010402CCT domain
PfamPF062031.1E-17261303IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MASVAEGKGG YWAGLEGRRC DSCKGAAALL YCGADAAYLC GECDARVHGA SLLALHHERV  60
WVCEVCEQAP AAFTCKADAA ALCVACDADI HAANPLARRH ERIPIVPFLE PLKPSTTSAA  120
AFLLGNEKDE EKENDATSWL LPNPGHTHPK VLIGAPEIKS TEFYFSDVNP YLDPEYSTKM  180
DAGFYQADSV VPVHAKASGF DGGAPPPPSF LPADAPIELD CAPSKPSYGS YTTHSMSHSV  240
SSSEAAVVPD GIGNGAAPTD REARVMRYRE KRKSRRFEKT IRYASRKAYA ETRPRIKGRF  300
AKRSEIEAKL DRLYPSSAAA AVRISYGRAL FMPWTRILMH DLGFSLYL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382845.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 3
TrEMBLM0RQF10.0M0RQF1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P08210_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.13e-54CONSTANS-like 5