PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P07850_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 319aa MW: 35496.2 Da PI: 8.3354

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P07850_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.7	3.7e-20	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv++v+++G g+W +I++ g++R++k+c++rw +yl GSMUA_Achr11P07850_001 15 KGPWTPEEDRKLVEYVEKHGRGSWQRIPKIAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	59.6	6.7e-19	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l GSMUA_Achr11P07850_001 68 RGKFTEEEEQLIIHLHSMLGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.651	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	3.48E-33	12	109	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-17	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	5.5E-19	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-26	16	69	IPR009057	Homeodomain-like
CDD	cd00167	6.13E-14	17	62	No hit	No description
PROSITE profile	PS51294	29.498	63	117	IPR017930	Myb domain
SMART	SM00717	2.3E-17	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	8.4E-18	68	113	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-27	70	118	IPR009057	Homeodomain-like
CDD	cd00167	2.54E-13	70	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MVKSPNRDET GGVKKGPWTP EEDRKLVEYV EKHGRGSWQR IPKIAGLNRC GKSCRLRWTN 60 YLRPDIRRGK FTEEEEQLII HLHSMLGNKW SSIATKLPGR TDNEIKNYWN THLRKKLIRM 120 GIDPVTHRPA TNLNLLTGLS NLLSAGGLGG TASHLDNALK LQADVAHLLK LQLVQSLIQV 180 LTSSYGTPNM DLMNLFRHYL NNIGLQPTPE RSFPSDAAAV TASDASRTEE PSAEISNVSS 240 TSSIPASSST HPLVSASSET KNIDLVQSSD TLYTNTLASE SFETCWDNLM KSDNLDSHFG 300 WKDIIDQIIK GVSFLIQCM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-30	15	117	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009382811.1	0.0	PREDICTED: transcription factor MYB39-like
Refseq	XP_009382812.1	0.0	PREDICTED: transcription factor MYB39-like
Swissprot	Q9S9Z2	9e-75	MYB93_ARATH; Transcription factor MYB93
TrEMBL	M0RQB5	0.0	M0RQB5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P07850_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5529	31	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-75	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]