PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P07180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 167aa    MW: 19280.1 Da    PI: 9.4533
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P07180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.1e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEde+l+  ++ +G g W+t +r  g+ R++k+c++rw +yl
  GSMUA_Achr11P07180_001 14 KGAWTKEEDERLIAHIRAHGEGGWRTLPRAAGLLRCGKSCRLRWINYL 61
                            79******************************99************97 PP
2Myb_DNA-binding61.32e-1967111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg++T+eEde +++++++lG++ W++Ia++++ gRt++++k++w+++
  GSMUA_Achr11P07180_001  67 RGNFTQEEDETIINLHRLLGNR-WSLIAARLP-GRTDNEIKNYWNTH 111
                             89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129414.999961IPR017930Myb domain
SMARTSM007175.7E-121363IPR001005SANT/Myb domain
SuperFamilySSF466897.75E-3013108IPR009057Homeodomain-like
PfamPF002491.0E-131461IPR001005SANT/Myb domain
CDDcd001673.28E-91661No hitNo description
PROSITE profilePS5129428.68462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2865116IPR009057Homeodomain-like
SMARTSM007174.5E-1866114IPR001005SANT/Myb domain
PfamPF002491.3E-1767111IPR001005SANT/Myb domain
CDDcd001674.17E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLIAHIR AHGEGGWRTL PRAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TQEEDETIIN LHRLLGNRWS LIAARLPGRT DNEIKNYWNT HIRRKLLSRG  120
VDPITHRPFD EPPKCPDLNL ELCISPPLLR REPSFQLQLG ITDSATE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382726.11e-113PREDICTED: myb-related protein Zm38-like
SwissprotP200251e-86MYB38_MAIZE; Myb-related protein Zm38
TrEMBLM0RQ481e-119M0RQ48_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P07180_0011e-119(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.17e-85myb domain protein 4
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]