PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P06260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 371aa    MW: 39931.5 Da    PI: 6.0102
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P06260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.7e-30161219259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+++p++++itY++eHnh+
  GSMUA_Achr11P06260_001 161 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTNPNMLVITYTSEHNHP 219
                             699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-31152221IPR003657WRKY domain
PROSITE profilePS5081132.535155221IPR003657WRKY domain
SuperFamilySSF1182904.97E-26158221IPR003657WRKY domain
SMARTSM007746.0E-37160220IPR003657WRKY domain
PfamPF031061.5E-25162219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MCDYFWQRRE NGQGDLADVV RSGGSGSASG SEFPVVSDWH PPSEPTVPPS SSTAATESTG  60
GGGGGGIMSQ QLLMSEEMIT KPRDIIPRAF QLSSGGAKPS PLSPIEASSG AVGCSADDGG  120
VQISSTRSLG VKRRKNQAKK VVCIPAPAAA TNRSSGEVVP SDLWAWRKYG QKPIKGSPYP  180
RGYYRCSSSK GCSARKQVER SRTNPNMLVI TYTSEHNHPW PTQRNALAGS TRSQASKNSS  240
SASKTSFGRS LVSPTAPKAD PKVKEEEEAA EIDNEPMIPE SNHPDDFFAD LAELETDPMS  300
PIFSKVLIHA KQPEEEEEEP EDKGLDDALL DNIRHSSVPQ LSIPVCTYVM KALLSKSLSI  360
QIDVEREPFR A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-25136222380Disease resistance protein RRS1
5w3x_D6e-25136222380Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382611.10.0PREDICTED: probable WRKY transcription factor 14
RefseqXP_018676198.10.0PREDICTED: probable WRKY transcription factor 14
SwissprotQ9SA803e-71WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLM0RPV60.0M0RPV6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P06260_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.12e-67WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]