PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P05840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 473aa    MW: 52700.3 Da    PI: 6.6736
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P05840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.93.1e-133544681374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lLl+cA++v++g+l +a+a+L+++  la+pdgd+mqR+a++fteALa+r +r +++ly+a+ +++t     +e++aa++ f ++
  GSMUA_Achr11P05840_001  54 LIHLLLNCANHVAAGSLDRANAFLEQIALLAAPDGDAMQRIASHFTEALARRALRLWPGLYHAIDSTRTVLLPLAEAAAARRHFLDL 140
                             689*************************************************************999999888************** PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                             +P+l+++++++NqaI+ea+ege+ vHi+D+++s  +QW++Llq L +Rpe+pp+l+iTgv++    ++e l++t+ rL++ Ae+l++
  GSMUA_Achr11P05840_001 141 CPFLRLAFVVTNQAIMEAMEGERVVHIVDLNVSDATQWISLLQGLRARPEDPPHLKITGVHE----HRELLNRTAVRLSEEAERLDI 223
                             **************************************************************....9******************** PP

                    GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............................................... 214
                             pf+fn+ v++rl++l++e+Lrvk+gEala+++vlqlh+ll                                               
  GSMUA_Achr11P05840_001 224 PFQFNA-VVSRLDNLDVESLRVKTGEALAISSVLQLHSLLasndsasdprkaqrvapisqlnlgefldkdhaanghsssvesalssp 309
                             ******.7****************************************************************************988 PP

                    GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                               s+s++ + d++L  +++lsPk++vv+eqea+hn++ + erf+eal yy+a+fd+l++++pr+s er  vE++llg+ei+n++ace
  GSMUA_Achr11P05840_001 310 FASASSPARMDSFLASLWGLSPKLMVVTEQEANHNAPALSERFVEALFYYAAMFDCLDSTVPRQSIERLRVEKMLLGEEIKNIIACE 396
                             566666668899*************************************************************************** PP

                    GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             g er+erhe+l+kW +r+++aGF+ vpls++ +  a++ll+ ++ dgy+v++e+g+++ +W+dr+L+s+SaWr
  GSMUA_Achr11P05840_001 397 GWERKERHEKLQKWAQRMDSAGFGMVPLSYYGM-PARRLLHSFGCDGYKVKDENGCFMVCWQDRSLYSISAWR 468
                             *****************************9987.699***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.94928449IPR005202Transcription factor GRAS
PfamPF035141.1E-13054468IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MTPLTANVAR DEGSSSVTSS PLKTFSLMSL SPPPLPPYAP WLRELKSDER GLCLIHLLLN  60
CANHVAAGSL DRANAFLEQI ALLAAPDGDA MQRIASHFTE ALARRALRLW PGLYHAIDST  120
RTVLLPLAEA AAARRHFLDL CPFLRLAFVV TNQAIMEAME GERVVHIVDL NVSDATQWIS  180
LLQGLRARPE DPPHLKITGV HEHRELLNRT AVRLSEEAER LDIPFQFNAV VSRLDNLDVE  240
SLRVKTGEAL AISSVLQLHS LLASNDSASD PRKAQRVAPI SQLNLGEFLD KDHAANGHSS  300
SVESALSSPF ASASSPARMD SFLASLWGLS PKLMVVTEQE ANHNAPALSE RFVEALFYYA  360
AMFDCLDSTV PRQSIERLRV EKMLLGEEIK NIIACEGWER KERHEKLQKW AQRMDSAGFG  420
MVPLSYYGMP ARRLLHSFGC DGYKVKDENG CFMVCWQDRS LYSISAWRCK RYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-61424676377Protein SCARECROW
5b3h_D9e-61424676377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260420.0AC226042.1 Musa acuminata clone BAC MA4-52N2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382566.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLM0RPR40.0M0RPR4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P05840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]