PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P04090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 294aa    MW: 31977.7 Da    PI: 5.4138
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P04090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.1e-181461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd++lvd+++ +G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr11P04090_001 14 KGPWTPEEDKILVDYIQSHGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                            79******************************99************97 PP
2Myb_DNA-binding53.55.6e-1767112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++T+eE++ ++++++  G++ W+tIa+ ++ gRt++++k++w+++l
  GSMUA_Achr11P04090_001  67 RGPFTPEEQKSIIQLHAIVGNK-WSTIAAQLP-GRTDNEIKNFWNTHL 112
                             89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-24563IPR009057Homeodomain-like
PROSITE profilePS5129416.928961IPR017930Myb domain
SuperFamilySSF466893.56E-3111108IPR009057Homeodomain-like
SMARTSM007176.6E-141363IPR001005SANT/Myb domain
PfamPF002491.4E-161461IPR001005SANT/Myb domain
CDDcd001671.55E-111661No hitNo description
PROSITE profilePS5129425.71962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2764116IPR009057Homeodomain-like
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.6E-1567112IPR001005SANT/Myb domain
CDDcd001671.18E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRAPCCDKS GLKKGPWTPE EDKILVDYIQ SHGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TPEEQKSIIQ LHAIVGNKWS TIAAQLPGRT DNEIKNFWNT HLKKRLLRMG  120
LLHPDPSDSS PAAASSRHMA QWESARLEAE ARLSRESLFA HSASAAAAAA VTNPAVNLPP  180
LKPEPDFFLR IWNSEIGDAF RKTAASATDE SSPEEETESK SCVTGGGPPV VAGMDDSSGS  240
NEVVDDVSEE SYQLYLDFGS GDDDLGLFGG QVGAFSSLFS SDLNVETSLD TAFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382382.10.0PREDICTED: myb-related protein Myb4-like
RefseqXP_018675869.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9M2D91e-106MYB17_ARATH; Transcription factor MYB17
TrEMBLM0RP890.0M0RP89_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P04090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-94myb domain protein 17