PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P03040_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 38448.5 Da PI: 5.7485 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172 | 1.8e-53 | 5 | 130 | 1 | 125 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 +ppGfrFhPtdeelv +yLkkkv+++k++l +vi+++d+y++ePwdL++ ++ e++ewyfFs++dkky+tg+r+nrat +g+Wk GSMUA_Achr11P03040_001 5 VPPGFRFHPTDEELVGYYLKKKVASQKIDL-DVIRDIDLYRIEPWDLQErcRIGYeEQSEWYFFSHKDKKYPTGTRTNRATMAGFWK 90 69****************************.9***************953433332566**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125 atg+dk+v++ k++l+g++ktLvfykgrap+g+ktdW+mhe GSMUA_Achr11P03040_001 91 ATGRDKAVHD-KNKLIGMRKTLVFYKGRAPNGQKTDWIMHE 130 **********.999**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.24E-54 | 3 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.867 | 5 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-27 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MESCVPPGFR FHPTDEELVG YYLKKKVASQ KIDLDVIRDI DLYRIEPWDL QERCRIGYEE 60 QSEWYFFSHK DKKYPTGTRT NRATMAGFWK ATGRDKAVHD KNKLIGMRKT LVFYKGRAPN 120 GQKTDWIMHE VMDRLCDIFF CSYPHSQEEG WVVCRAFKKR ATSPTRILDD VWSCSYGYDY 180 VGRMNSMIDP MIRLQKQPVT LHCKQETESD ELRYLNSNQF VKLPQLESPS LTPATRPSSK 240 MTVLEEEDEE QARTPNGMEI VTDWRALDKF VASQLGQEGS SSVSAQVVSD FVGDNDSEMA 300 LLLLQSETKE VGKFNAFRSS GGPNCETGIC IFEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-48 | 2 | 160 | 12 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP335047 | 0.0 | KP335047.1 Musa AAB Group cultivar Rasthali vascular related NAC-domain protein 2 (VND2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018676029.1 | 0.0 | PREDICTED: NAC domain-containing protein 37-like isoform X1 | ||||
Swissprot | Q9SL41 | 1e-130 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | M0RNY4 | 0.0 | M0RNY4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P03040_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3625 | 37 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 1e-132 | vascular related NAC-domain protein 1 |
Publications ? help Back to Top | |||
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