PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P01610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 810aa    MW: 90283.1 Da    PI: 7.1039
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P01610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23128229199
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+a++L +gD+v+
  GSMUA_Achr11P01610_001 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHDVEWKFRHIYRGQPKRHLLTTGWSVFVSAKRLIAGDSVL 213
                             99*****************************9777666.49********************************************** PP

                             EEE-SSSEE..EEEEE-S CS
                      B3  82 Fkldgrsefelvvkvfrk 99 
                             F   ++++ +l+++++r+
  GSMUA_Achr11P01610_001 214 FI--WNEKNQLLLGIRRA 229
                             **..8899999****997 PP
2Auxin_resp118.94.2e-39254337183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+t+s F+v+YnPras+seFv++++k++ka+  ++vsvGmRf+m fete++s rr++Gt++g+sd+dpvrWpnS+Wrs+k
  GSMUA_Achr11P01610_001 254 AAHAAATNSRFTVFYNPRASPSEFVIPLSKYLKAVFhTRVSVGMRFRMLFETEECSVRRYMGTITGLSDMDPVRWPNSHWRSVK 337
                             79********************************87599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.27E-48115257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-40121243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.80E-21127228No hitNo description
PROSITE profilePS5086312.337128230IPR003340B3 DNA binding domain
SMARTSM010192.8E-24128230IPR003340B3 DNA binding domain
PfamPF023628.5E-22128229IPR003340B3 DNA binding domain
PfamPF065073.2E-34254337IPR010525Auxin response factor
PfamPF023093.0E-6703797IPR033389AUX/IAA domain
SuperFamilySSF542774.05E-7707787No hitNo description
PROSITE profilePS5174523.218713797IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MKLSTVGISQ QAPEGIEKRC LNSELWHACA GPLVCLPTAG TRVVYFPQGH SEQVAASTNK  60
EVEGHIPNYP SLPPQLFCQL HNVTMHADVE TDEVYAQMTL QPLSLQEQKD AYFPIEMGVV  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS LQPPAQELIA RDLHDVEWKF  180
RHIYRGQPKR HLLTTGWSVF VSAKRLIAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTVFYNP RASPSEFVIP LSKYLKAVFH TRVSVGMRFR  300
MLFETEECSV RRYMGTITGL SDMDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSLF PLRLKRPWHA PFPHGIIFRP HRHLNTKEDE LNAVMWPRSG TGEQGLHPFN  420
LPSLGVGSWM PQRLEPLLLG NELNQYQAMS AAALEDLRGV DILKQQFLQS QQPFQFLQQP  480
GTTSHSFHGQ DFPQTPQRQA IGSQSPRLLE SQPNSAPHQQ LQQLANEQQK QQQVQHTHAY  540
ADTFQVPNNH VQQPSSLPSR FYDKPDFPDP CLVFSSIAPS SSVQGILGSA YPEGNSNPLN  600
CSQLGQSMVS KQSQQSPGPR RIMSQVTPFG PGVLLPSFAE KDSSGGNKKC PGTQSQAPSL  660
LSIADPSLTM HATVGDASAT PYVASCIQNS LYGYLDESSS LLQNSGEVGP QSQTFVKVYK  720
SGSVGRSLDI SRFNNYDELR VELGHMFGIE GLLEDPRRSG WQLVFVDREN DVLLLGDDPW  780
ESFVNNVWYI KILSPEDVHK MGKQGAEAIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611535845388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382091.10.0PREDICTED: auxin response factor 12-like isoform X2
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLM0RNJ10.0M0RNJ1_MUSAM; Auxin response factor
STRINGGSMUA_Achr11P01610_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8