PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P01420_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 478aa    MW: 52442.9 Da    PI: 7.3137
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P01420_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.9e-1671115147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             r +WT+eE+ ++++a +++G   W++I +++g ++t+ q++s+ qk+
  GSMUA_Achr11P01420_001  71 REKWTEEEHSKFLEALQLYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 115
                             789*****************88.*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1565119IPR009057Homeodomain-like
PROSITE profilePS5129420.74666120IPR017930Myb domain
TIGRFAMsTIGR015575.9E-1769118IPR006447Myb domain, plants
SMARTSM007179.5E-1370118IPR001005SANT/Myb domain
PfamPF002491.3E-1371114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-971111IPR009057Homeodomain-like
CDDcd001677.60E-1073116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MLYILGRETY LKSASKIGLL CDQEQQQPVC NSHNQMHVDA KTPIPQSKEI DSSGEEQAPR  60
VRKPYTITKQ REKWTEEEHS KFLEALQLYG RAWRRIEEHI GTKTAVQIRS HAQKFFSKVV  120
RESGSNDSTV TLKAIEIPPP RPKRKPLRPY PRKSGNSSSK ETPAALKQLE RPPLQTHTIC  180
EEENRSPTSV LSAVGSEALG SMFSNSQNIC SSPAASAAGS NDQDNGGQLT TMTVQEKHKL  240
PRFGPRLDQS SMVIDQCSDM HTSPEAQVPA LKLFGKMVVL TDLNKSSAPS NGNAAKAKLT  300
VAVDTKEWQE NKAFDLNSKL EMCLQSAAHG VPPRDSTRSA WNAYPGVIPP MFYCFPLVGE  360
DSVEHMFLPP PWSMYGDLPF PFVYPQLQHP QQSPMEAAGE QEMQGEGSWS GSNTASTSGW  420
GLSDQNVDGV DSKKAAKAGG GSSARGFVPY RRCAIESEAQ HSATVSDDGE GQAIRLCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382073.10.0PREDICTED: protein REVEILLE 1-like isoform X1
TrEMBLM0RNH20.0M0RNH2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P01420_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.13e-43MYB_related family protein