PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr11P01420_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 478aa MW: 52442.9 Da PI: 7.3137 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 7.9e-16 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE+ ++++a +++G W++I +++g ++t+ q++s+ qk+ GSMUA_Achr11P01420_001 71 REKWTEEEHSKFLEALQLYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 115 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.05E-15 | 65 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.746 | 66 | 120 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.9E-17 | 69 | 118 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.5E-13 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 71 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-9 | 71 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.60E-10 | 73 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 478 aa Download sequence Send to blast |
MLYILGRETY LKSASKIGLL CDQEQQQPVC NSHNQMHVDA KTPIPQSKEI DSSGEEQAPR 60 VRKPYTITKQ REKWTEEEHS KFLEALQLYG RAWRRIEEHI GTKTAVQIRS HAQKFFSKVV 120 RESGSNDSTV TLKAIEIPPP RPKRKPLRPY PRKSGNSSSK ETPAALKQLE RPPLQTHTIC 180 EEENRSPTSV LSAVGSEALG SMFSNSQNIC SSPAASAAGS NDQDNGGQLT TMTVQEKHKL 240 PRFGPRLDQS SMVIDQCSDM HTSPEAQVPA LKLFGKMVVL TDLNKSSAPS NGNAAKAKLT 300 VAVDTKEWQE NKAFDLNSKL EMCLQSAAHG VPPRDSTRSA WNAYPGVIPP MFYCFPLVGE 360 DSVEHMFLPP PWSMYGDLPF PFVYPQLQHP QQSPMEAAGE QEMQGEGSWS GSNTASTSGW 420 GLSDQNVDGV DSKKAAKAGG GSSARGFVPY RRCAIESEAQ HSATVSDDGE GQAIRLCL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009382073.1 | 0.0 | PREDICTED: protein REVEILLE 1-like isoform X1 | ||||
TrEMBL | M0RNH2 | 0.0 | M0RNH2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P01420_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G37260.1 | 3e-43 | MYB_related family protein |